Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   HBL79_RS08755 Genome accession   NZ_CP050316
Coordinates   1816777..1817367 (-) Length   196 a.a.
NCBI ID   WP_017806897.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain ESV-135     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1811777..1822367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBL79_RS08740 (HBL79_08740) - 1811986..1813782 (+) 1797 WP_035685582.1 AMP-dependent synthetase/ligase -
  HBL79_RS08745 (HBL79_08745) aspA 1813873..1815300 (-) 1428 WP_035685584.1 aspartate ammonia-lyase -
  HBL79_RS08750 (HBL79_08750) clpX 1815523..1816773 (-) 1251 WP_035685587.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  HBL79_RS08755 (HBL79_08755) clpP 1816777..1817367 (-) 591 WP_017806897.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  HBL79_RS08760 (HBL79_08760) tig 1817485..1818783 (-) 1299 WP_035685589.1 trigger factor -
  HBL79_RS08765 (HBL79_08765) - 1819289..1819840 (+) 552 Protein_1709 BCCT family transporter -
  HBL79_RS08770 (HBL79_08770) - 1819844..1820200 (-) 357 Protein_1710 DNA-processing protein DprA -
  HBL79_RS08775 (HBL79_08775) - 1820360..1820710 (-) 351 WP_035685595.1 DUF305 domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21613.88 Da        Isoelectric Point: 5.0640

>NTDB_id=378095 HBL79_RS08755 WP_017806897.1 1816777..1817367(-) (clpP) [Avibacterium paragallinarum strain ESV-135]
MALIPMVVEQTARGERSYDIYSRLLKERVIFLSGQVEDNMANLIVAQLLFLESENPDKDISIYINSPGGSVTAGMAIYDT
MQFIKPDVRTLCIGQACSMGAFLLAGGTPGKRAALPNARVMIHQPLGGFRGQASDIQIHAQEILKIKQTLNEKLAFHTGQ
PLAKIENDTDRDNFMSAEEAKAYGLIDEVLIKRETE

Nucleotide


Download         Length: 591 bp        

>NTDB_id=378095 HBL79_RS08755 WP_017806897.1 1816777..1817367(-) (clpP) [Avibacterium paragallinarum strain ESV-135]
ATGGCTTTAATCCCTATGGTCGTTGAACAGACCGCAAGAGGCGAGCGTTCATATGACATTTATTCACGTTTATTAAAAGA
GCGTGTGATTTTTTTAAGTGGGCAAGTTGAAGACAATATGGCGAATTTGATCGTCGCACAACTGCTTTTTTTAGAATCGG
AAAATCCAGACAAAGATATTAGTATTTACATTAACTCTCCGGGCGGCTCGGTAACCGCGGGAATGGCGATTTATGACACA
ATGCAATTCATTAAGCCTGATGTGAGAACCCTTTGTATTGGACAGGCTTGTTCAATGGGAGCATTTTTACTCGCGGGTGG
CACACCGGGCAAACGTGCGGCATTACCAAATGCACGGGTGATGATTCACCAACCACTAGGGGGATTCCGTGGGCAGGCTT
CCGATATTCAAATTCACGCCCAAGAAATCTTAAAAATTAAGCAGACATTGAATGAAAAATTGGCATTCCACACAGGGCAG
CCTTTAGCAAAAATTGAAAACGATACTGATCGCGACAATTTTATGTCTGCCGAAGAAGCCAAAGCTTACGGCTTAATTGA
CGAAGTCCTAATTAAAAGAGAAACGGAATAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(13-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

68.041

98.98

0.673
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.368

96.939

0.653
  clpP Streptococcus thermophilus LMD-9

54.639

98.98

0.541
  clpP Streptococcus pyogenes JRS4

54.639

98.98

0.541
  clpP Streptococcus pyogenes MGAS315

54.639

98.98

0.541
  clpP Streptococcus thermophilus LMG 18311

54.639

98.98

0.541
  clpP Streptococcus pneumoniae R6

55.263

96.939

0.536
  clpP Streptococcus pneumoniae Rx1

55.263

96.939

0.536
  clpP Streptococcus pneumoniae D39

55.263

96.939

0.536
  clpP Streptococcus pneumoniae TIGR4

55.263

96.939

0.536
  clpP Streptococcus mutans UA159

53.333

99.49

0.531
  clpP Lactococcus lactis subsp. cremoris KW2

53.158

96.939

0.515
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

52.105

96.939

0.505