Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   HBL79_RS08750 Genome accession   NZ_CP050316
Coordinates   1815523..1816773 (-) Length   416 a.a.
NCBI ID   WP_035685587.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain ESV-135     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1810523..1821773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBL79_RS08730 (HBL79_08730) - 1810970..1811380 (+) 411 WP_026138449.1 DNA polymerase III subunit psi -
  HBL79_RS08735 (HBL79_08735) rimI 1811382..1811825 (+) 444 WP_017805347.1 ribosomal protein S18-alanine N-acetyltransferase -
  HBL79_RS08740 (HBL79_08740) - 1811986..1813782 (+) 1797 WP_035685582.1 AMP-dependent synthetase/ligase -
  HBL79_RS08745 (HBL79_08745) aspA 1813873..1815300 (-) 1428 WP_035685584.1 aspartate ammonia-lyase -
  HBL79_RS08750 (HBL79_08750) clpX 1815523..1816773 (-) 1251 WP_035685587.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  HBL79_RS08755 (HBL79_08755) clpP 1816777..1817367 (-) 591 WP_017806897.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  HBL79_RS08760 (HBL79_08760) tig 1817485..1818783 (-) 1299 WP_035685589.1 trigger factor -
  HBL79_RS08765 (HBL79_08765) - 1819289..1819840 (+) 552 Protein_1709 BCCT family transporter -
  HBL79_RS08770 (HBL79_08770) - 1819844..1820200 (-) 357 Protein_1710 DNA-processing protein DprA -
  HBL79_RS08775 (HBL79_08775) - 1820360..1820710 (-) 351 WP_035685595.1 DUF305 domain-containing protein -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45789.51 Da        Isoelectric Point: 4.8097

>NTDB_id=378094 HBL79_RS08750 WP_035685587.1 1815523..1816773(-) (clpX) [Avibacterium paragallinarum strain ESV-135]
MTTEQQLHCSICGKERSEVKKLIAGEDGAICNECIELCHNLLVEAEQQANENPQENASQPEKAELPTPHQIRAHLDDYVI
GQDYAKKVLAVAVYNHYKRQQAGYKADDVELGKSNILLIGPTGSGKTLLAETLARMLNVPFAMADATTLTEAGYVGEDVE
NVLQKLLQNCDYDVEKAEKGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLVEGTIASIPPQGGRKHPQQEMLRLD
TSKILFICGGAFAGLDKIIEKRVHVGSGIGFGAEVKGESDKATLTELFAQVEPDDLMKFGLIPEFIGRLPVIAPLAELDE
EALIQILTEPKNALTKQYQVLFNLENVKLEFTHDALVAMAKQALERKTGARGLRSIVEGLLLDTMYDLPSLKNVEKVIIE
ESTVTKKQAPQIIYKS

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=378094 HBL79_RS08750 WP_035685587.1 1815523..1816773(-) (clpX) [Avibacterium paragallinarum strain ESV-135]
ATGACAACAGAACAACAACTCCATTGTTCCATCTGCGGCAAAGAACGCAGCGAAGTCAAAAAATTGATCGCGGGTGAAGA
TGGGGCGATTTGTAATGAATGTATCGAACTTTGCCACAATTTATTGGTTGAGGCAGAGCAACAAGCAAACGAAAACCCGC
AAGAAAACGCCTCACAACCTGAAAAGGCAGAATTACCTACACCTCATCAAATTCGTGCGCATTTAGATGATTATGTTATT
GGGCAAGACTACGCTAAAAAAGTGCTTGCCGTTGCGGTGTATAATCATTACAAACGCCAACAGGCGGGCTATAAGGCTGA
CGATGTGGAACTAGGTAAAAGTAATATTTTGCTTATTGGTCCAACGGGAAGCGGAAAAACCCTATTGGCAGAAACCCTAG
CTAGAATGCTAAATGTGCCTTTTGCAATGGCTGATGCAACCACACTCACCGAAGCGGGTTATGTTGGTGAAGATGTAGAA
AATGTGCTACAAAAACTTTTGCAAAATTGCGATTATGACGTGGAAAAAGCAGAAAAAGGCATTATTTACATTGATGAAAT
TGACAAAATTACGCGGAAATCAGAGAACCCATCTATTACTCGCGATGTATCAGGCGAGGGCGTTCAGCAAGCCTTACTTA
AATTAGTAGAGGGAACGATTGCGTCAATCCCACCACAAGGTGGACGCAAACACCCACAACAAGAGATGTTACGCCTTGAT
ACATCAAAAATTCTCTTTATCTGCGGCGGGGCTTTCGCGGGGTTAGATAAAATCATTGAAAAACGCGTACATGTAGGTAG
TGGTATCGGCTTTGGAGCAGAAGTGAAAGGAGAATCAGATAAAGCTACCTTGACGGAACTATTTGCCCAAGTTGAACCTG
ATGATTTAATGAAATTTGGTTTAATCCCTGAATTTATCGGGCGTTTACCCGTGATAGCACCATTAGCCGAGCTTGATGAA
GAAGCCTTAATCCAAATTCTGACCGAACCGAAAAATGCACTTACTAAGCAATATCAAGTGCTATTCAACCTTGAAAATGT
GAAGTTAGAATTTACCCACGATGCCCTCGTGGCAATGGCAAAACAGGCGTTGGAAAGAAAAACAGGGGCGAGGGGATTGC
GTTCTATCGTAGAGGGATTGTTGCTTGATACGATGTACGATCTTCCTTCATTGAAAAATGTCGAGAAGGTAATCATTGAA
GAGAGTACGGTAACAAAAAAACAAGCTCCACAGATAATATATAAATCGTAA

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(113-312)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(318-395)

ClpX C4-type zinc finger (zf-C4_ClpX)

(7-43)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

57.664

98.798

0.57
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.122

98.558

0.543