Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   FQ488_RS12940 Genome accession   NZ_CP042289
Coordinates   2755794..2757041 (-) Length   415 a.a.
NCBI ID   WP_185184803.1    Uniprot ID   -
Organism   Enterococcus hirae strain HDC14-2     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 2750794..2762041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQ488_RS12930 (FQ488_13030) rny 2752523..2754079 (-) 1557 WP_010720620.1 ribonuclease Y -
  FQ488_RS12935 (FQ488_13035) recA 2754648..2755688 (-) 1041 WP_010720621.1 recombinase RecA Machinery gene
  FQ488_RS12940 (FQ488_13040) cinA 2755794..2757041 (-) 1248 WP_185184803.1 competence/damage-inducible protein A Machinery gene
  FQ488_RS12945 (FQ488_13045) pgsA 2757357..2757935 (-) 579 WP_010737268.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FQ488_RS12950 (FQ488_13050) - 2758104..2758994 (-) 891 WP_010720624.1 RodZ domain-containing protein -
  FQ488_RS12955 (FQ488_13055) yfmH 2759225..2760514 (-) 1290 WP_034867280.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  FQ488_RS12960 (FQ488_13060) yfmF 2760507..2761775 (-) 1269 WP_010737266.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45740.16 Da        Isoelectric Point: 4.7334

>NTDB_id=376678 FQ488_RS12940 WP_185184803.1 2755794..2757041(-) (cinA) [Enterococcus hirae strain HDC14-2]
MKSEIIAVGTELLLGQVVNTNATFLSEQLADLGIDVYYQTVVGDNPDRLESLLQLAETRSDLIILCGGLGPTEDDLTKEV
TAKHLGEELIQNTEGYKKLLAFFETTKRKMTENNLQQSQIIDGGIALPNRTGLALGTFYQTADHVYLLLPGPPSELKPMF
IEQARPLLEQNFPSEEMLISKVLRFYGIGESQLVTELKDLIETQINPTIAPYAKPNEVTLRLTVKTKDKHAGNQALLVLE
EKVLARVGEYFYGYGDDNSLPKVVVELLKERNQTITAAESLTAGAFQSALGEISGVSQVFPGGFITYSLETKAEFLHIDD
ALLKQHGTVSQECAEQMAIQARNLAKTDYAISFTGVAGPDTLEGQPAGTVWIAVATSEGEVISQKYQFTRDRSHIKNSAV
MQGFDLIRRQLLRKK

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=376678 FQ488_RS12940 WP_185184803.1 2755794..2757041(-) (cinA) [Enterococcus hirae strain HDC14-2]
ATGAAATCAGAAATCATAGCAGTAGGGACAGAACTTTTACTAGGACAAGTAGTCAACACGAATGCCACGTTTTTATCCGA
ACAGTTAGCAGACCTCGGGATTGATGTGTATTATCAAACGGTGGTTGGTGATAATCCCGACCGCTTAGAATCATTACTCC
AATTAGCAGAAACCAGAAGTGACTTGATCATTTTATGTGGAGGGTTGGGACCGACAGAAGACGACCTGACGAAAGAAGTT
ACTGCGAAACATCTAGGGGAAGAATTGATCCAAAACACCGAAGGCTATAAAAAATTGTTAGCATTTTTTGAAACGACCAA
GCGTAAAATGACTGAAAATAATTTACAACAATCACAAATCATCGATGGGGGGATTGCTTTACCTAATCGCACAGGCTTAG
CATTAGGTACGTTCTATCAAACAGCAGACCATGTCTATCTCTTGTTACCTGGACCACCGAGCGAATTAAAGCCAATGTTC
ATTGAACAAGCTCGCCCATTATTGGAGCAAAACTTTCCATCTGAAGAAATGCTGATCTCAAAAGTTTTACGTTTTTACGG
TATCGGGGAATCCCAACTAGTCACAGAATTAAAAGACTTGATTGAAACACAGATCAACCCAACGATTGCCCCTTACGCAA
AACCTAACGAAGTCACTTTACGATTAACTGTGAAGACCAAAGACAAACATGCAGGAAACCAAGCCTTACTTGTTTTGGAA
GAAAAAGTATTGGCGAGAGTAGGTGAGTACTTCTATGGATATGGTGATGATAATTCATTGCCTAAAGTGGTCGTAGAATT
ATTAAAGGAAAGAAACCAAACAATAACTGCAGCAGAAAGTTTGACTGCTGGAGCCTTTCAATCAGCTTTGGGAGAGATCT
CTGGTGTTTCTCAAGTCTTCCCAGGAGGCTTCATTACCTATTCTTTAGAAACTAAAGCAGAATTTTTACACATCGATGAT
GCACTATTGAAGCAGCATGGAACCGTCAGCCAAGAATGTGCAGAACAAATGGCTATCCAAGCACGTAATTTAGCAAAAAC
AGATTATGCGATTTCGTTTACTGGAGTGGCTGGACCAGATACCTTAGAAGGACAGCCAGCTGGAACAGTTTGGATCGCGG
TTGCAACAAGCGAAGGGGAGGTCATTTCGCAGAAATACCAATTTACCAGAGACCGTTCTCATATAAAGAATAGCGCAGTA
ATGCAAGGATTTGATCTCATTAGAAGACAACTATTAAGAAAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

53.589

100

0.54
  cinA Streptococcus pneumoniae TIGR4

52.143

100

0.528
  cinA Streptococcus pneumoniae Rx1

51.905

100

0.525
  cinA Streptococcus pneumoniae R6

51.905

100

0.525
  cinA Streptococcus mitis SK321

51.905

100

0.525
  cinA Streptococcus pneumoniae D39

51.905

100

0.525
  cinA Streptococcus mitis NCTC 12261

51.429

100

0.52
  cinA Bacillus subtilis subsp. subtilis str. 168

47.215

99.518

0.47
  cinA Streptococcus suis isolate S10

42.619

100

0.431

Multiple sequence alignment