Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   FPV14_RS08440 Genome accession   NZ_CP042286
Coordinates   1788436..1789410 (-) Length   324 a.a.
NCBI ID   WP_031787262.1    Uniprot ID   A0A7U7JUV7
Organism   Staphylococcus argenteus strain B3-25B     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1783436..1794410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPV14_RS08400 (FPV14_08400) gcvT 1783936..1785027 (-) 1092 WP_000093342.1 glycine cleavage system aminomethyltransferase GcvT -
  FPV14_RS08405 (FPV14_08405) - 1785184..1785708 (-) 525 WP_047556497.1 shikimate kinase -
  FPV14_RS08410 (FPV14_08410) - 1785695..1785844 (-) 150 WP_072324192.1 hypothetical protein -
  FPV14_RS08415 (FPV14_08415) comGF 1785943..1786398 (-) 456 WP_000698658.1 competence type IV pilus minor pilin ComGF Machinery gene
  FPV14_RS08420 (FPV14_08420) comGE 1786358..1786657 (-) 300 WP_000800819.1 hypothetical protein Machinery gene
  FPV14_RS08425 (FPV14_08425) comGD 1786644..1787090 (-) 447 WP_072467207.1 competence type IV pilus minor pilin ComGD Machinery gene
  FPV14_RS08430 (FPV14_08430) comGC 1787068..1787379 (-) 312 WP_000921699.1 competence type IV pilus major pilin ComGC Machinery gene
  FPV14_RS08435 (FPV14_08435) comGB 1787394..1788464 (-) 1071 WP_047556495.1 competence type IV pilus assembly protein ComGB Machinery gene
  FPV14_RS08440 (FPV14_08440) comGA 1788436..1789410 (-) 975 WP_031787262.1 competence type IV pilus ATPase ComGA Machinery gene
  FPV14_RS08445 (FPV14_08445) - 1789462..1790085 (-) 624 WP_001222932.1 MBL fold metallo-hydrolase -
  FPV14_RS08450 (FPV14_08450) - 1790082..1790411 (-) 330 WP_001018874.1 MTH1187 family thiamine-binding protein -
  FPV14_RS08455 (FPV14_08455) - 1790411..1791397 (-) 987 WP_047556493.1 ROK family glucokinase -
  FPV14_RS08460 (FPV14_08460) - 1791397..1791597 (-) 201 WP_000087563.1 YqgQ family protein -
  FPV14_RS08465 (FPV14_08465) - 1791578..1793041 (-) 1464 WP_031787264.1 rhomboid family intramembrane serine protease -
  FPV14_RS08470 (FPV14_08470) - 1793053..1793592 (-) 540 WP_072292060.1 5-formyltetrahydrofolate cyclo-ligase -
  FPV14_RS08475 (FPV14_08475) rpmG 1793804..1793953 (-) 150 WP_001265709.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36867.03 Da        Isoelectric Point: 9.0234

>NTDB_id=376628 FPV14_RS08440 WP_031787262.1 1788436..1789410(-) (comGA) [Staphylococcus argenteus strain B3-25B]
MKILFQEIINKAIVMKASDVHFIPVHNEVSIKFRINDNLEQYEEIGNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYHF
NKIYFLRISTLPLSLGQESCVIRIVPQYFKQTKSTYKFNDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNEKAGINYVNSFKAILRCDPDVILIGEIRDKEVAKCVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGISVQELIQATNLIINQRLVTTIKQQRQLVCEILSQQQLQYFFSHNHSLPTSFKKLETKLDDMTKAGVICESTM
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=376628 FPV14_RS08440 WP_031787262.1 1788436..1789410(-) (comGA) [Staphylococcus argenteus strain B3-25B]
ATGAAGATTTTATTTCAAGAGATAATCAACAAAGCGATAGTAATGAAAGCGAGTGATGTCCATTTTATTCCTGTTCATAA
TGAAGTGAGTATTAAATTTCGTATAAATGACAATTTGGAACAGTATGAAGAAATTGGAAATAGTATTTATCAAAAGCTAT
TAGTTTATATGAAATTTCAAGCTGGTCTCGATGTATCTACGCAACAAGTTGCTCAGAGTGGTCGTTATAGCTACCATTTT
AATAAAATTTATTTTTTAAGAATTTCAACATTGCCATTATCACTTGGTCAAGAAAGTTGTGTGATAAGAATAGTTCCTCA
ATATTTTAAACAAACTAAATCAACATATAAATTTAATGATTTTAAACATTTAATGAATAAGAAACAAGGCTTATTGTTAT
TTAGTGGTCCGACGGGTTCAGGTAAAAGTACTTTAATGTATCAAATGGTCTCATACGCTAACAAAGCATTAAACTTAAAT
GTTATATCTATTGAAGACCCAGTAGAAATGCAAATTCCTGGAATAGTTCAAATAAACGTAAATGAAAAAGCTGGGATTAA
CTATGTCAATTCATTTAAAGCGATATTAAGGTGTGACCCAGATGTTATTCTTATAGGGGAAATTAGAGATAAAGAAGTAG
CTAAATGTGTCATCCAAGCAAGTTTAAGTGGTCATCTAGTACTCACTACCTTACATGCAACAGATTGTAAAGGTGCAATT
TTAAGATTACTAGAAATGGGAATTTCAGTACAAGAACTAATACAAGCAACTAATTTAATTATAAATCAAAGACTTGTTAC
TACAATTAAACAGCAACGACAATTAGTGTGTGAAATTTTATCACAACAACAACTTCAGTATTTCTTCTCGCATAATCATT
CATTACCTACCTCATTTAAAAAACTAGAAACAAAGCTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAAGTACAATG
GATAAGTATATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7JUV7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

95.988

100

0.96
  comGA Staphylococcus aureus N315

95.988

100

0.96

Multiple sequence alignment