Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   FPV14_RS08665 Genome accession   NZ_CP042286
Coordinates   1833007..1833708 (-) Length   233 a.a.
NCBI ID   WP_072467210.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain B3-25B     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1828007..1838708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPV14_RS08645 (FPV14_08645) rpsT 1828916..1829167 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  FPV14_RS08650 (FPV14_08650) holA 1829217..1830191 (-) 975 WP_001282558.1 DNA polymerase III subunit delta -
  FPV14_RS08655 (FPV14_08655) comEC 1830248..1832449 (-) 2202 WP_047556778.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  FPV14_RS08660 (FPV14_08660) - 1832454..1832915 (-) 462 WP_000439693.1 ComE operon protein 2 -
  FPV14_RS08665 (FPV14_08665) comEA 1833007..1833708 (-) 702 WP_072467210.1 ComEA family DNA-binding protein Machinery gene
  FPV14_RS08670 (FPV14_08670) - 1833748..1834464 (-) 717 WP_047556478.1 class I SAM-dependent methyltransferase -
  FPV14_RS08675 (FPV14_08675) rsfS 1834467..1834820 (-) 354 WP_001088023.1 ribosome silencing factor -
  FPV14_RS08680 (FPV14_08680) yqeK 1834821..1835405 (-) 585 WP_047556476.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  FPV14_RS08685 (FPV14_08685) - 1835395..1835964 (-) 570 WP_000725169.1 nicotinate-nucleotide adenylyltransferase -
  FPV14_RS08690 (FPV14_08690) yhbY 1835967..1836257 (-) 291 WP_000955238.1 ribosome assembly RNA-binding protein YhbY -
  FPV14_RS08695 (FPV14_08695) aroE 1836262..1837068 (-) 807 WP_047526766.1 shikimate dehydrogenase -
  FPV14_RS08700 (FPV14_08700) yqeH 1837081..1838181 (-) 1101 WP_047556473.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26449.07 Da        Isoelectric Point: 9.5275

>NTDB_id=376631 FPV14_RS08665 WP_072467210.1 1833007..1833708(-) (comEA) [Staphylococcus argenteus strain B3-25B]
MVLLYQFLLRYKDFFNQWKLYIISAVVLIMLLIGFIFWRQDEYTARDFENKDTNLKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYIDVKGAVKHPNVYKMTSKDRVIDLLNKAQLLDDADVNQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHEKN
GNTNNGNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 702 bp        

>NTDB_id=376631 FPV14_RS08665 WP_072467210.1 1833007..1833708(-) (comEA) [Staphylococcus argenteus strain B3-25B]
GTGGTTTTGTTGTATCAATTTTTATTACGCTATAAAGATTTTTTCAATCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGTTATTAATAGGTTTTATATTCTGGAGACAAGATGAATATACTGCAAGAGATTTTGAAAATAAAGATACTA
ATCTGAAACAAAGCACAAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTTAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATATCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AATTGATTTACTTAATAAAGCACAATTATTGGATGATGCAGATGTAAATCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTTATACCGCATAAAGGACAAAAGAACGTTGAACCACAAATTGGAGTAAATAGTGTGCACGAAAAAAAT
GGGAACACAAATAATGGAAACACAAATAATACTAAAGTAAATCTAAATACGGCATCTGTATCTGAATTGATGTCTGTTCC
TGGAGTAGGTCAAGCTAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGA
AAAAAGTAAAAGGTTTTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(169-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

91.379

99.571

0.91
  comEA Staphylococcus aureus N315

91.379

99.571

0.91

Multiple sequence alignment