Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   FQV73_RS03060 Genome accession   NZ_CP042271
Coordinates   634328..635578 (+) Length   416 a.a.
NCBI ID   WP_043867100.1    Uniprot ID   -
Organism   Bacillus velezensis strain LPL061     
Function   unknown (predicted from homology)   
Unclear

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 615244..672323 634328..635578 within 0


Gene organization within MGE regions


Location: 615244..672323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQV73_RS02980 dapA 615850..616719 (+) 870 WP_003154166.1 4-hydroxy-tetrahydrodipicolinate synthase -
  FQV73_RS02985 rnjB 616898..618565 (+) 1668 WP_003154163.1 ribonuclease J2 -
  FQV73_RS02990 - 618681..619418 (+) 738 WP_003154162.1 ClpP family protease -
  FQV73_RS02995 - 619415..619624 (+) 210 WP_003154161.1 YlzJ-like family protein -
  FQV73_RS03000 - 619759..622119 (+) 2361 WP_015388225.1 DNA translocase FtsK -
  FQV73_RS03005 - 622244..622969 (+) 726 WP_003154159.1 GntR family transcriptional regulator -
  FQV73_RS03010 - 623141..624310 (+) 1170 WP_094247885.1 MFS transporter -
  FQV73_RS03015 - 624417..624872 (+) 456 WP_003154157.1 MarR family transcriptional regulator -
  FQV73_RS03020 - 624872..627991 (+) 3120 WP_043867097.1 MMPL family transporter -
  FQV73_RS03025 - 628143..629423 (+) 1281 WP_014305019.1 pitrilysin family protein -
  FQV73_RS03030 - 629420..630706 (+) 1287 WP_025851236.1 pitrilysin family protein -
  FQV73_RS03035 - 630765..631493 (+) 729 WP_043867098.1 SDR family oxidoreductase -
  FQV73_RS03040 - 631569..631826 (+) 258 WP_003154150.1 DUF3243 domain-containing protein -
  FQV73_RS03045 - 631954..632745 (+) 792 WP_003154149.1 YmfK family protein -
  FQV73_RS03050 - 632764..633654 (+) 891 WP_043867099.1 RodZ domain-containing protein -
  FQV73_RS03055 pgsA 633729..634310 (+) 582 WP_003154147.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FQV73_RS03060 cinA 634328..635578 (+) 1251 WP_043867100.1 competence/damage-inducible protein A Machinery gene
  FQV73_RS03065 recA 635749..636792 (+) 1044 WP_003154145.1 recombinase RecA Machinery gene
  FQV73_RS03070 - 636961..638142 (+) 1182 WP_003154142.1 serine hydrolase domain-containing protein -
  FQV73_RS03075 rny 638435..639994 (+) 1560 WP_003154140.1 ribonuclease Y -
  FQV73_RS03080 - 640055..640849 (+) 795 WP_003154137.1 TIGR00282 family metallophosphoesterase -
  FQV73_RS03085 spoVS 641049..641309 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  FQV73_RS03090 tdh 641568..642614 (+) 1047 WP_043867101.1 L-threonine 3-dehydrogenase -
  FQV73_RS03095 - 642627..643805 (+) 1179 WP_088037143.1 glycine C-acetyltransferase -
  FQV73_RS03100 miaB 643948..645477 (+) 1530 WP_003154116.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  FQV73_RS03105 - 645480..645911 (+) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein -
  FQV73_RS03110 cotE 646165..646710 (+) 546 WP_003154111.1 outer spore coat protein CotE -
  FQV73_RS03115 mutS 646829..649414 (+) 2586 WP_003154108.1 DNA mismatch repair protein MutS -
  FQV73_RS03120 mutL 649430..651307 (+) 1878 WP_003154106.1 DNA mismatch repair endonuclease MutL -
  FQV73_RS03125 - 651360..652475 (-) 1116 WP_043867102.1 site-specific integrase -
  FQV73_RS03130 - 652776..653957 (+) 1182 WP_043867633.1 AimR family lysis-lysogeny pheromone receptor -
  FQV73_RS03135 - 654329..654718 (-) 390 WP_043867103.1 helix-turn-helix transcriptional regulator -
  FQV73_RS03145 - 655159..655476 (+) 318 WP_043867105.1 hypothetical protein -
  FQV73_RS03150 - 655489..655713 (+) 225 WP_043867106.1 hypothetical protein -
  FQV73_RS03155 - 655700..656572 (+) 873 WP_043867107.1 phage replisome organizer N-terminal domain-containing protein -
  FQV73_RS03160 - 656499..657389 (+) 891 WP_240903262.1 ATP-binding protein -
  FQV73_RS03165 - 657404..657553 (+) 150 WP_017417259.1 hypothetical protein -
  FQV73_RS03170 - 657550..657708 (+) 159 WP_163104070.1 hypothetical protein -
  FQV73_RS03175 - 657705..658253 (+) 549 WP_043867108.1 hypothetical protein -
  FQV73_RS03180 - 658222..658389 (+) 168 WP_163104071.1 hypothetical protein -
  FQV73_RS03185 - 658362..658502 (+) 141 WP_015387918.1 BH0509 family protein -
  FQV73_RS03190 - 658515..658670 (+) 156 WP_163104072.1 hypothetical protein -
  FQV73_RS03195 - 658750..658953 (+) 204 WP_014721584.1 XtrA/YqaO family protein -
  FQV73_RS03200 - 659094..659474 (+) 381 WP_043867109.1 hypothetical protein -
  FQV73_RS03205 - 659471..659848 (+) 378 WP_043867110.1 YopX family protein -
  FQV73_RS03210 - 660069..660326 (+) 258 WP_043867112.1 hypothetical protein -
  FQV73_RS03215 - 660331..661155 (+) 825 WP_043867113.1 DNA adenine methylase -
  FQV73_RS03220 - 661152..661991 (+) 840 WP_043867114.1 phosphoadenosine phosphosulfate reductase family protein -
  FQV73_RS03225 - 662073..662486 (+) 414 WP_043867115.1 hypothetical protein -
  FQV73_RS03230 - 662630..662980 (-) 351 WP_017417491.1 Ig-like domain-containing protein -
  FQV73_RS03235 - 663089..663523 (+) 435 WP_043867116.1 hypothetical protein -
  FQV73_RS03240 - 663629..663805 (+) 177 WP_163104073.1 hypothetical protein -
  FQV73_RS03245 - 663860..664312 (+) 453 WP_043867635.1 ArpU family phage packaging/lysis transcriptional regulator -
  FQV73_RS03250 - 664309..664851 (+) 543 WP_038458303.1 tyrosine-type recombinase/integrase -
  FQV73_RS03255 - 665080..666342 (+) 1263 WP_043867117.1 hypothetical protein -
  FQV73_RS03260 - 666632..666925 (+) 294 WP_043867118.1 hypothetical protein -
  FQV73_RS03265 - 666993..667886 (+) 894 WP_043867119.1 hypothetical protein -
  FQV73_RS03270 - 667992..668348 (+) 357 WP_046376718.1 hypothetical protein -
  FQV73_RS03275 - 668366..669661 (+) 1296 WP_043867120.1 PIN domain-containing protein -
  FQV73_RS03280 - 669710..670075 (+) 366 WP_043867121.1 HNH endonuclease -
  FQV73_RS03285 - 670303..670818 (+) 516 WP_014418488.1 phage terminase small subunit P27 family -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45106.44 Da        Isoelectric Point: 5.3789

>NTDB_id=376518 FQV73_RS03060 WP_043867100.1 634328..635578(+) (cinA) [Bacillus velezensis strain LPL061]
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDLIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFRSIEEYFAKTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLAEHGSRLYMLLPGPPSEL
RPMFENEAKPLLLKKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAAILERVGEFFYGYDDTSLVKELSKACRQNKITISSAESFTGGLFSEWVTDLSGASQLFAGGVVCYSDSVKQHVLG
VKAETLAESGAVSKECAKELAAGVRKLTGSDIGISFTGVAGPDPQEGHAPGRVFIGISAEGKEEVHEFHFAGSRTGIRKR
AAKYGCHLILKMLDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=376518 FQV73_RS03060 WP_043867100.1 634328..635578(+) (cinA) [Bacillus velezensis strain LPL061]
ATGGAAATAGCAAAAAAAGCAGAAATCATTGCGGTCGGCTCGGAGCTTCTGCTCGGCCAGATCGCCAATACGAACGCGCA
GTTTATCAGTAAAGAGCTGGCGGAAATCGGTGTAAACGTGTTTTACCATACCGCTGTCGGTGACAATCCGGAGCGGCTTA
AGCAAGTCATCCGCATTGCCGAAGAGCGCTCAGACCTGATTATTTTTTCAGGCGGTCTCGGACCGACCAAGGACGATTTG
ACGAAAGAAACCATTGCAAACACACTGGGGCGCCCGCTCGTTCTGAATGACGAAGCGTTCCGGTCGATCGAAGAATATTT
CGCGAAAACAAAACGGACCATGTCGCCGAATAACCGCAAACAGGCGCTCGTCATTGAGGGCTCGGACGTTTTGGCGAATC
ATTTCGGTATGGCACCGGGAATGCTTGCAGAGCACGGCTCAAGGCTTTATATGCTGCTTCCCGGGCCGCCGAGCGAGCTG
CGTCCGATGTTTGAAAATGAAGCGAAACCGCTGCTTCTTAAAAAGCTTGGTTCTAATGAGAAAATCGTTTCAACCGTGCT
GCGGTTTTTCGGAATCGGTGAATCCCAGCTTGAAGCTGATTTAGAAGATATCATTGACGCGCAGACGAATCCGACGATTG
CGCCGCTTGCTGCTGACGGCGAGGTCACGCTGCGTTTAACGGCGAAACATGCTGACGAAAAAGAAACAGAACGGCTTTTA
AAAGAAACGGAAGCCGCCATTTTAGAACGTGTCGGTGAATTTTTCTACGGATATGATGATACGTCCCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAAAACAAAATCACGATTTCTTCTGCCGAAAGCTTTACAGGCGGCCTGTTTTCAGAGTGGGTGA
CTGATTTAAGCGGTGCGTCTCAACTATTTGCAGGAGGCGTTGTCTGCTATTCCGACAGCGTGAAACAGCATGTGCTCGGC
GTGAAAGCTGAGACGCTCGCAGAAAGCGGAGCGGTCAGCAAAGAGTGTGCGAAAGAGCTTGCAGCCGGTGTGAGAAAGCT
GACCGGAAGCGATATCGGCATCAGCTTTACCGGGGTCGCGGGTCCCGACCCGCAGGAAGGGCATGCGCCGGGCCGCGTCT
TTATCGGCATTTCAGCGGAAGGAAAAGAAGAGGTGCACGAATTTCACTTTGCCGGCTCAAGAACCGGAATCAGAAAGCGC
GCCGCTAAATACGGCTGCCATCTCATTTTAAAAATGCTGGATCAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(261-413)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

90.385

100

0.904
  cinA Streptococcus mitis NCTC 12261

47.368

100

0.476
  cinA Streptococcus mitis SK321

46.89

100

0.471
  cinA Streptococcus pneumoniae TIGR4

46.411

100

0.466
  cinA Streptococcus pneumoniae Rx1

46.411

100

0.466
  cinA Streptococcus pneumoniae R6

46.411

100

0.466
  cinA Streptococcus pneumoniae D39

46.172

100

0.464
  cinA Streptococcus mutans UA159

46.247

99.279

0.459
  cinA Streptococcus suis isolate S10

40.921

93.99

0.385

Multiple sequence alignment