Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   FPL17_RS15695 Genome accession   NZ_CP041970
Coordinates   3407835..3409967 (+) Length   710 a.a.
NCBI ID   WP_167515420.1    Uniprot ID   -
Organism   Acinetobacter dispersus strain NCCP 16014     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3402835..3414967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPL17_RS15675 (FPL17_15865) pilM 3404798..3405856 (+) 1059 WP_005185539.1 pilus assembly protein PilM Machinery gene
  FPL17_RS15680 (FPL17_15870) pilN 3405856..3406512 (+) 657 WP_005185537.1 PilN domain-containing protein Machinery gene
  FPL17_RS15685 (FPL17_15875) comO 3406509..3407243 (+) 735 WP_005185536.1 type 4a pilus biogenesis protein PilO Machinery gene
  FPL17_RS15690 (FPL17_15880) pilP 3407246..3407773 (+) 528 WP_159886064.1 pilus assembly protein PilP Machinery gene
  FPL17_RS15695 (FPL17_15885) pilQ 3407835..3409967 (+) 2133 WP_167515420.1 type IV pilus secretin PilQ Machinery gene
  FPL17_RS15700 (FPL17_15890) aroK 3409987..3410547 (+) 561 WP_005185528.1 shikimate kinase AroK -
  FPL17_RS15705 (FPL17_15895) aroB 3410568..3411650 (+) 1083 WP_159886068.1 3-dehydroquinate synthase -
  FPL17_RS15710 (FPL17_15900) - 3411670..3412530 (+) 861 WP_159886070.1 hypothetical protein -

Sequence

Protein


Download         Length: 710 a.a.        Molecular weight: 77032.47 Da        Isoelectric Point: 5.9950

>NTDB_id=375097 FPL17_RS15695 WP_167515420.1 3407835..3409967(+) (pilQ) [Acinetobacter dispersus strain NCCP 16014]
MNHAFRQFSMGAIAIAVMQVASAQVSMTNIVPMSLADQGTEIRVMFNGLPPQPQAYQLEQPSRLILDFDKAQQTLTKNSI
PVSTAEASSVEVASDDQRSRVIVNLKDAGAFTTRVEGNIFVLKINSAKPTAINSPSVATRQVQQGVSNIGFQRGNQGEGL
VVIDLLGNNTPVDVQQQGSKIVVRTAGNKIPMHLARRLNTNDFATPVASVDAYNDKGNGVITIQSAGSYEYMAYQAENKL
TISLKRPVDNSPVKAKAQTYTGNKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIVLKTKN
LDKRRNGSVIWIAPVSELIKAEEEEAKAIAQSVKLAPLQTEYIQLSYAKAADIEKLITQGKSGNNSNNSSGSSSNDTLTG
GLLSPRGTVSLDPRTNTLIVNDTSQKIDQIRKMVDLLDVSVKQVMIEARIVSASTDFTREMGVKWGILSQGITNNNDLLV
GGSDQTLWDLRKPTKDGDTGGWKYEIERPDNLNVDLGAVTPGASRIAFGLISLSDFMLDLELSAVQADGYGEVISTPKVM
TADKQPAKIESGKKIPYTSSSGGGANAVPKTEFIDATLSLDVTPSITPDGKVMMKLNITKDSQSTPTPTGQLTINKNQID
TNVLVDNGETVVLGGIFEQENISSQVKVPFLGDLPYVGRLFRRDLKTDNKRELLIFITPRIVNDTLTRNH

Nucleotide


Download         Length: 2133 bp        

>NTDB_id=375097 FPL17_RS15695 WP_167515420.1 3407835..3409967(+) (pilQ) [Acinetobacter dispersus strain NCCP 16014]
ATGAATCATGCATTCCGTCAATTTTCTATGGGTGCAATCGCTATTGCAGTGATGCAAGTTGCATCAGCACAAGTGAGTAT
GACCAATATTGTACCAATGAGTTTGGCAGATCAGGGCACGGAAATTCGTGTCATGTTTAACGGTCTTCCACCGCAACCAC
AGGCTTATCAGCTAGAACAACCTTCTCGTTTGATTTTGGACTTTGACAAAGCGCAGCAGACCTTAACAAAAAACTCGATT
CCTGTATCGACTGCTGAAGCCAGTTCCGTCGAGGTTGCATCAGATGATCAGCGCTCTCGAGTCATCGTAAATTTAAAAGA
TGCGGGTGCATTTACTACGCGTGTTGAAGGTAATATTTTTGTACTGAAAATTAATTCAGCAAAACCAACGGCGATTAACA
GTCCATCTGTGGCAACACGTCAGGTACAACAAGGCGTTTCCAATATTGGTTTCCAAAGAGGAAATCAGGGTGAAGGATTG
GTTGTGATCGATTTGTTGGGCAATAACACACCAGTCGATGTGCAACAACAAGGCAGTAAAATCGTGGTGCGTACTGCGGG
AAATAAAATTCCTATGCATTTAGCACGTCGCTTAAATACCAATGATTTTGCAACACCTGTTGCAAGCGTCGATGCCTATA
ATGATAAAGGCAATGGCGTGATTACCATTCAATCTGCGGGTAGCTATGAGTATATGGCTTATCAGGCCGAAAATAAGCTG
ACCATTAGTTTGAAGCGTCCTGTGGATAATTCTCCAGTCAAAGCCAAGGCACAAACCTATACGGGTAACAAAATCTCTTT
AGATTTCCAAGATATTGAAGTTCGTCGCGTATTACAGTTGCTTGCCGACTTTACTGGGATCAATATGGTAGCGGCAGATA
CGGTGCAAGGTAATATTACTTTGCGTTTAAAAGATGTGCCATGGGATCAGGCTTTAGATATTGTATTAAAAACCAAAAAT
CTTGATAAACGCCGTAATGGCAGTGTGATTTGGATTGCCCCTGTTTCTGAGTTGATTAAGGCGGAAGAAGAAGAAGCCAA
AGCAATTGCACAGAGTGTGAAGTTAGCACCACTTCAAACGGAATATATCCAATTAAGCTATGCAAAAGCTGCTGATATTG
AAAAGTTAATTACGCAAGGGAAAAGCGGTAATAATAGCAATAACTCATCGGGCTCAAGTAGTAATGATACATTGACTGGA
GGTTTGCTTAGCCCAAGAGGAACAGTTTCTCTTGATCCTCGAACCAATACTTTAATTGTAAATGATACCTCACAAAAAAT
TGATCAGATTCGTAAGATGGTCGATCTACTTGATGTTTCTGTTAAGCAAGTCATGATTGAAGCACGTATTGTCAGTGCCA
GTACCGATTTTACCCGAGAGATGGGGGTGAAATGGGGCATTTTATCGCAAGGAATTACCAATAATAATGATCTTCTAGTT
GGAGGGAGTGATCAGACATTATGGGATTTGAGAAAACCGACTAAGGATGGTGATACGGGTGGCTGGAAATACGAGATTGA
GCGCCCTGATAATTTGAATGTAGATTTAGGCGCAGTGACGCCTGGCGCAAGTCGTATTGCTTTTGGTTTGATTAGCCTGT
CTGATTTTATGTTGGACTTAGAGTTGTCTGCGGTACAAGCAGATGGTTATGGCGAAGTGATTTCTACACCAAAAGTCATG
ACCGCAGATAAGCAACCAGCAAAAATTGAATCAGGTAAGAAAATTCCGTATACATCATCTTCGGGTGGCGGCGCAAATGC
TGTACCTAAAACGGAATTTATTGATGCAACTTTAAGTCTGGATGTTACACCAAGTATTACGCCTGATGGTAAGGTGATGA
TGAAGTTGAACATTACCAAAGACTCACAGAGTACACCAACACCTACAGGTCAGTTGACGATCAATAAAAACCAAATCGAC
ACCAATGTCTTGGTGGACAATGGTGAAACCGTGGTTCTTGGTGGAATTTTTGAACAAGAAAATATTAGTTCTCAAGTAAA
AGTGCCGTTCTTGGGTGATCTGCCTTATGTTGGTCGCTTATTCCGTCGAGATCTGAAAACAGATAATAAACGTGAACTGC
TTATTTTTATTACGCCGAGAATTGTTAATGACACTTTGACGAGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(292-334)

Bacterial type II/III secretion system short domain (Secretin_N)

(361-443)

Bacterial type II and III secretion system protein (Secretin)

(544-702)

AMIN domain (AMIN)

(37-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

74.448

100

0.759
  pilQ Acinetobacter baumannii strain A118

74.309

100

0.758
  comQ Acinetobacter baylyi ADP1

71.905

100

0.728
  pilQ Pseudomonas aeruginosa PAK

39.171

100

0.413
  pilQ Legionella pneumophila strain ERS1305867

37.838

99.014

0.375
  pilQ Legionella pneumophila strain Lp02

37.838

99.014

0.375

Multiple sequence alignment