Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   FPL17_RS15685 Genome accession   NZ_CP041970
Coordinates   3406509..3407243 (+) Length   244 a.a.
NCBI ID   WP_005185536.1    Uniprot ID   N9MTJ1
Organism   Acinetobacter dispersus strain NCCP 16014     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3401509..3412243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPL17_RS15670 (FPL17_15860) ponA 3402035..3404635 (-) 2601 WP_159886062.1 penicillin-binding protein PBP1a -
  FPL17_RS15675 (FPL17_15865) pilM 3404798..3405856 (+) 1059 WP_005185539.1 pilus assembly protein PilM Machinery gene
  FPL17_RS15680 (FPL17_15870) pilN 3405856..3406512 (+) 657 WP_005185537.1 PilN domain-containing protein Machinery gene
  FPL17_RS15685 (FPL17_15875) comO 3406509..3407243 (+) 735 WP_005185536.1 type 4a pilus biogenesis protein PilO Machinery gene
  FPL17_RS15690 (FPL17_15880) pilP 3407246..3407773 (+) 528 WP_159886064.1 pilus assembly protein PilP Machinery gene
  FPL17_RS15695 (FPL17_15885) pilQ 3407835..3409967 (+) 2133 WP_167515420.1 type IV pilus secretin PilQ Machinery gene
  FPL17_RS15700 (FPL17_15890) aroK 3409987..3410547 (+) 561 WP_005185528.1 shikimate kinase AroK -
  FPL17_RS15705 (FPL17_15895) aroB 3410568..3411650 (+) 1083 WP_159886068.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27379.86 Da        Isoelectric Point: 4.7360

>NTDB_id=375095 FPL17_RS15685 WP_005185536.1 3406509..3407243(+) (comO) [Acinetobacter dispersus strain NCCP 16014]
MNQDELNQDTVAAKKKKMSVEQFFQQFNTLDMNNYGSWPLSVKITCWIFVFLAVAALGYFVVIKSQLESIANAQAQEQSL
LNEFREKDSKLRNLQQYQAQLQEMEANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLENEVKQEFFIEQPISI
DATGDYHAFGAFVTGIAALPRIVTLHDFTVEAKEDTQKKSDIPVVNYTVKAKTYRYVGADEQTNNAAGAPTTQAATTPPA
QGGK

Nucleotide


Download         Length: 735 bp        

>NTDB_id=375095 FPL17_RS15685 WP_005185536.1 3406509..3407243(+) (comO) [Acinetobacter dispersus strain NCCP 16014]
ATGAACCAAGATGAATTGAATCAAGACACCGTTGCTGCGAAGAAAAAGAAGATGTCCGTCGAGCAATTTTTCCAGCAATT
TAATACCTTGGATATGAATAACTACGGTAGTTGGCCGCTGTCGGTTAAAATTACCTGCTGGATTTTCGTCTTCTTGGCGG
TTGCTGCATTGGGTTATTTTGTGGTGATTAAATCCCAACTTGAATCGATTGCAAATGCACAAGCACAAGAGCAAAGCTTG
CTGAATGAGTTTCGGGAAAAAGACTCAAAATTGCGTAATTTGCAGCAATATCAAGCGCAACTTCAAGAAATGGAAGCGAA
CTTTAATCAACAATTAGAGCAGTTGCCTAAAGAAACAGAAATTCCAAGCTTGGTTGAGGACATTAACTTAACGGGTGTCA
ATTCTGGTCTGAAATTTAAGAATATCCGTCTGGAAAATGAAGTAAAGCAAGAGTTCTTTATTGAGCAACCGATCAGTATT
GATGCCACTGGTGATTATCATGCTTTTGGTGCCTTTGTTACCGGTATCGCAGCGTTACCTCGTATTGTGACCTTGCATGA
TTTTACGGTTGAAGCAAAAGAAGATACACAGAAAAAATCGGATATCCCTGTGGTGAATTATACCGTCAAAGCAAAAACAT
ATCGTTATGTGGGTGCGGATGAACAAACAAATAATGCTGCGGGTGCACCAACAACTCAAGCAGCGACTACTCCACCTGCG
CAAGGAGGAAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(70-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9MTJ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

74.583

98.361

0.734
  pilO Acinetobacter baumannii D1279779

72.951

100

0.73

Multiple sequence alignment