Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilP   Type   Machinery gene
Locus tag   FPL17_RS15690 Genome accession   NZ_CP041970
Coordinates   3407246..3407773 (+) Length   175 a.a.
NCBI ID   WP_159886064.1    Uniprot ID   -
Organism   Acinetobacter dispersus strain NCCP 16014     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 3402246..3412773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPL17_RS15675 (FPL17_15865) pilM 3404798..3405856 (+) 1059 WP_005185539.1 pilus assembly protein PilM Machinery gene
  FPL17_RS15680 (FPL17_15870) pilN 3405856..3406512 (+) 657 WP_005185537.1 PilN domain-containing protein Machinery gene
  FPL17_RS15685 (FPL17_15875) comO 3406509..3407243 (+) 735 WP_005185536.1 type 4a pilus biogenesis protein PilO Machinery gene
  FPL17_RS15690 (FPL17_15880) pilP 3407246..3407773 (+) 528 WP_159886064.1 pilus assembly protein PilP Machinery gene
  FPL17_RS15695 (FPL17_15885) pilQ 3407835..3409967 (+) 2133 WP_167515420.1 type IV pilus secretin PilQ Machinery gene
  FPL17_RS15700 (FPL17_15890) aroK 3409987..3410547 (+) 561 WP_005185528.1 shikimate kinase AroK -
  FPL17_RS15705 (FPL17_15895) aroB 3410568..3411650 (+) 1083 WP_159886068.1 3-dehydroquinate synthase -
  FPL17_RS15710 (FPL17_15900) - 3411670..3412530 (+) 861 WP_159886070.1 hypothetical protein -

Sequence


Protein


Download         Length: 175 a.a.        Molecular weight: 19265.51 Da        Isoelectric Point: 9.6398

>NTDB_id=375096 FPL17_RS15690 WP_159886064.1 3407246..3407773(+) (pilP) [Acinetobacter dispersus strain NCCP 16014]
MNNYKLLLGLLVGLSLVGCDSRIDAVNQKMAEIRNQPPLPIEPAPIFTPVPLFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFNRQPQPLESYALESLNMKGSMRGKTSNTIALIQTPDGQIERVQVGSYLGMNQGRIIKISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=375096 FPL17_RS15690 WP_159886064.1 3407246..3407773(+) (pilP) [Acinetobacter dispersus strain NCCP 16014]
GTGAATAACTATAAATTATTACTTGGTTTATTGGTTGGGTTAAGTTTAGTGGGGTGTGATTCAAGGATTGACGCCGTGAA
TCAAAAAATGGCAGAGATTCGGAATCAACCACCTTTGCCGATCGAACCAGCACCGATCTTTACCCCTGTGCCATTGTTTA
ACTATGCAGCACATCAGCTGAAAAGCCCGTTTATGCCAAGTTCTTTGGCGGCTGAGTTAAAAATTATGGCGGGTAAGCGT
GTTTATCCGAATTTTAACCGCCAGCCACAGCCTTTAGAAAGTTATGCGCTGGAATCGTTGAATATGAAGGGTAGTATGCG
GGGTAAAACCAGCAATACGATTGCTCTCATTCAAACACCAGATGGTCAAATTGAACGTGTACAAGTCGGTAGTTATTTGG
GGATGAACCAAGGACGTATTATTAAAATTAGTCCAACCCAAATAGATTTGGTGGAGATTGTACCTGATGGTCGTGAAGGC
TATGTCGAAAGACCTCGTACACTCGTTTTAATTGGGCCAGCGCCGTAA

Domains


Predicted by InterproScan.

(27-170)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

84.211

97.714

0.823

  comL Acinetobacter baylyi ADP1

72.571

100

0.726


Multiple sequence alignment