Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FPL04_RS16280 Genome accession   NZ_CP041965
Coordinates   3724268..3725524 (+) Length   418 a.a.
NCBI ID   WP_104621769.1    Uniprot ID   -
Organism   Xanthomonas arboricola strain SL2098     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3719268..3730524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPL04_RS22115 - 3720951..3721094 (-) 144 WP_166770464.1 hypothetical protein -
  FPL04_RS16265 (FPL04_16265) pilB 3721119..3722828 (-) 1710 WP_186811040.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FPL04_RS16270 (FPL04_16270) - 3722912..3723367 (-) 456 WP_154832506.1 pilin -
  FPL04_RS16275 (FPL04_16275) - 3723476..3723913 (-) 438 WP_104621768.1 pilin -
  FPL04_RS16280 (FPL04_16280) pilC 3724268..3725524 (+) 1257 WP_104621769.1 type II secretion system F family protein Machinery gene
  FPL04_RS16285 (FPL04_16285) - 3725531..3726394 (+) 864 WP_016849610.1 A24 family peptidase -
  FPL04_RS16290 (FPL04_16290) coaE 3726408..3727031 (+) 624 WP_154832507.1 dephospho-CoA kinase -
  FPL04_RS16295 (FPL04_16295) - 3727131..3727286 (+) 156 Protein_3100 SymE family type I addiction module toxin -
  FPL04_RS16300 (FPL04_16300) - 3727393..3728727 (-) 1335 WP_016904089.1 HAMP domain-containing sensor histidine kinase -
  FPL04_RS16305 (FPL04_16305) - 3728720..3729397 (-) 678 WP_006448355.1 response regulator transcription factor -
  FPL04_RS16310 (FPL04_16310) - 3729429..3729899 (-) 471 WP_064485041.1 hypothetical protein -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45398.79 Da        Isoelectric Point: 10.2788

>NTDB_id=374951 FPL04_RS16280 WP_104621769.1 3724268..3725524(+) (pilC) [Xanthomonas arboricola strain SL2098]
MSAVRSAVKTKTAAPAEQMSPFVWEGTDKRGVKMKGEQTARNANLLRAELRRQGITPLVVKVKPKPLFGAAGKKVSAKDI
SFFSRQMATMMKSGVPIVGALEIIGSGQKNPRMRTMVGQIRSDIEGGASLYEAVSKHPVQFDELYRNLVKAGEGAGVLET
VLDTVATYKENLEALKGKIKKALFYPAMVMAVAMLVSAILLVWVVPQFEDVFKGFGAELPAFTQMIVNLSRFMVSWWWLM
LFVLVGAAIGSVFAYKRSPAMQHGMDRLVLKVPIIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNSVYEKA
VLRMREDVSVGYPVNVAMKQVNLFPHMVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVG
GMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=374951 FPL04_RS16280 WP_104621769.1 3724268..3725524(+) (pilC) [Xanthomonas arboricola strain SL2098]
ATGTCAGCAGTACGTAGCGCAGTCAAGACCAAGACCGCCGCACCGGCGGAGCAGATGAGCCCGTTTGTCTGGGAGGGAAC
AGACAAGCGAGGCGTCAAGATGAAAGGCGAACAAACGGCCCGCAACGCAAATCTGCTGCGTGCGGAGTTGCGCCGTCAGG
GTATTACCCCTCTCGTCGTGAAAGTGAAGCCGAAGCCACTGTTCGGCGCTGCCGGAAAGAAAGTCTCCGCAAAAGACATT
TCATTTTTCAGTCGACAGATGGCAACCATGATGAAATCAGGCGTACCGATTGTCGGCGCACTGGAGATCATTGGTAGCGG
CCAAAAGAATCCGCGCATGCGCACAATGGTCGGCCAGATCAGGAGTGATATCGAAGGCGGCGCATCGCTCTACGAGGCGG
TGAGCAAGCACCCGGTGCAATTCGATGAGCTGTATCGGAATCTGGTCAAGGCAGGTGAGGGCGCAGGCGTACTGGAAACT
GTGCTCGACACAGTTGCCACGTATAAAGAGAACCTTGAAGCTCTTAAAGGCAAGATCAAGAAAGCGCTGTTTTACCCCGC
CATGGTGATGGCAGTGGCGATGCTGGTCAGTGCAATCCTGCTTGTTTGGGTGGTCCCACAATTTGAAGATGTCTTCAAAG
GCTTTGGCGCGGAGCTGCCTGCGTTCACTCAGATGATCGTCAACTTGTCTCGCTTTATGGTGTCTTGGTGGTGGCTGATG
CTGTTCGTTCTTGTTGGCGCTGCAATTGGGTCTGTTTTCGCATACAAGCGATCGCCAGCAATGCAACACGGCATGGATCG
GCTGGTGCTGAAGGTGCCGATCATCGGCCAGATCATGCATAACAGCTCCATTGCAAGATTCGCTCGAACAACCGCGGTGA
CCTTTAAAGCCGGCGTACCGCTAGTCGAGGCGCTGGGAATTGTGGCCGGTGCGACAGGCAACTCGGTCTACGAAAAAGCT
GTGCTGCGCATGCGGGAAGACGTCTCGGTCGGCTACCCTGTCAACGTGGCAATGAAGCAGGTCAACCTGTTCCCCCACAT
GGTGGTACAGATGACTGCCATCGGCGAAGAGGCCGGTGCCTTGGATGCAATGCTGTTCAAAGTTGCCGAATACTTCGAGC
AAGAGGTCAACAACGCCGTCGACGCGCTCAGCAGTCTGATCGAACCCCTGATCATGGTGTTCATTGGTACCATCGTCGGC
GGCATGGTCATCGGCATGTACCTGCCCATCTTCAAGCTCGCTTCGGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(287-409)

Type II secretion system (T2SS), protein F (T2SSF)

(83-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.086

96.89

0.514
  pilC Acinetobacter baylyi ADP1

52.088

97.368

0.507
  pilC Legionella pneumophila strain ERS1305867

52.273

94.737

0.495
  pilC Acinetobacter baumannii D1279779

51.365

96.411

0.495
  pilG Neisseria meningitidis 44/76-A

42.716

96.89

0.414
  pilG Neisseria gonorrhoeae MS11

42.574

96.651

0.411
  pilC Vibrio cholerae strain A1552

41.25

95.694

0.395
  pilC Vibrio campbellii strain DS40M4

40.196

97.608

0.392

Multiple sequence alignment