NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	G6M86_RS08490	Genome accession	NZ_CP049216
Coordinates	1716202..1716834 (-)	Length	210 a.a.
NCBI ID	WP_003496491.1	Uniprot ID	A0ABR5DBD2
Organism	Agrobacterium tumefaciens strain Q15/94
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1711202..1721834

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G6M86_RS08475 (G6M86_08465)	hupB	1711239..1711514 (-)	276	WP_003496481.1	DNA-binding protein HupB	-
G6M86_RS08480 (G6M86_08470)	lon	1711803..1714220 (-)	2418	WP_003512645.1	endopeptidase La	-
G6M86_RS08485 (G6M86_08475)	clpX	1714633..1715910 (-)	1278	WP_003512644.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
G6M86_RS08490 (G6M86_08480)	clpP	1716202..1716834 (-)	633	WP_003496491.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
G6M86_RS08495 (G6M86_08485)	-	1717290..1718537 (+)	1248	WP_065704702.1	sensor domain-containing diguanylate cyclase	-
G6M86_RS08500 (G6M86_08490)	-	1718623..1719876 (+)	1254	WP_065704705.1	cytochrome P450	-
G6M86_RS08505 (G6M86_08495)	-	1719935..1720303 (-)	369	WP_003512641.1	cupin domain-containing protein	-
G6M86_RS08510 (G6M86_08500)	-	1720319..1721602 (-)	1284	WP_003512640.1	O-acetylhomoserine aminocarboxypropyltransferase	-

Sequence

Protein

Download Length: 210 a.a. Molecular weight: 23272.83 Da Isoelectric Point: 6.1201

                                >NTDB_id=373330 G6M86_RS08490 WP_003496491.1 1716202..1716834(-) (clpP) [Agrobacterium tumefaciens strain Q15/94]

MKNPVDTAMALVPMVVEQTNRGERSYDIFSRLLKERIIFLTGPVEDQMASLVCAQLLFLEAENPKKEIALYINSPGGVVT

AGMAIYDTMQFIRPAVSTLCVGQAASMGSLLLAAGEKGMRFATPNARIMVHQPSGGFQGQASDIERHARDIIKMKRRLNE

VYVKHTGRTLEEVEKTLDRDHFMDADEAKDWGVIDKILTSRQEMEGAAAN

Nucleotide

Download Length: 633 bp

                                >NTDB_id=373330 G6M86_RS08490 WP_003496491.1 1716202..1716834(-) (clpP) [Agrobacterium tumefaciens strain Q15/94]

ATGAAAAATCCAGTTGATACCGCCATGGCTCTGGTGCCGATGGTCGTAGAGCAGACCAATCGCGGCGAACGCTCCTATGA

CATATTTTCCCGTCTTCTCAAGGAACGCATCATTTTCCTCACCGGACCGGTGGAAGACCAGATGGCCTCGCTCGTCTGCG

CGCAGCTGCTTTTCCTCGAGGCTGAAAACCCGAAGAAGGAAATCGCGCTCTACATCAATTCGCCGGGTGGCGTCGTGACC

GCCGGCATGGCGATCTACGATACGATGCAGTTCATCCGCCCTGCCGTTTCTACGCTTTGCGTCGGCCAGGCCGCATCCAT

GGGCTCGCTGCTTCTGGCCGCTGGCGAAAAGGGAATGCGTTTCGCAACTCCGAACGCCCGCATCATGGTGCATCAGCCCT

CCGGCGGCTTCCAGGGGCAGGCTTCGGATATCGAGCGTCACGCCCGCGACATCATCAAAATGAAGCGTCGCCTTAATGAA

GTCTACGTGAAGCACACCGGCCGTACGCTGGAAGAGGTTGAAAAAACCCTTGATCGCGACCACTTCATGGATGCCGACGA

GGCCAAGGACTGGGGTGTGATCGACAAGATCCTCACCTCGCGCCAGGAAATGGAAGGCGCCGCCGCGAATTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(21-200)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	60	92.857	0.557
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	56.915	89.524	0.51
clpP	Lactococcus lactis subsp. cremoris KW2	52.105	90.476	0.471
clpP	Streptococcus mutans UA159	49.231	92.857	0.457
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	50.526	90.476	0.457
clpP	Streptococcus pyogenes JRS4	48.969	92.381	0.452
clpP	Streptococcus pyogenes MGAS315	48.969	92.381	0.452
clpP	Streptococcus thermophilus LMG 18311	48.454	92.381	0.448
clpP	Streptococcus thermophilus LMD-9	48.454	92.381	0.448
clpP	Streptococcus pneumoniae Rx1	48.705	91.905	0.448
clpP	Streptococcus pneumoniae D39	48.705	91.905	0.448
clpP	Streptococcus pneumoniae R6	48.705	91.905	0.448
clpP	Streptococcus pneumoniae TIGR4	48.705	91.905	0.448

Detailed information NTG0373330