Detailed information NTG0373329

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: G6M86_RS08485
• Genome accession: NZ_CP049216
• Coordinates: 1714633..1715910 (-)
• Length: 425 a.a.
• NCBI ID: WP_003512644.1
• Uniprot ID: A0A1B9V328
• Organism: Agrobacterium tumefaciens strain Q15/94
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 1709633..1720910

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G6M86_RS08475 (G6M86_08465)	hupB	1711239..1711514 (-)	276	WP_003496481.1	DNA-binding protein HupB	-
G6M86_RS08480 (G6M86_08470)	lon	1711803..1714220 (-)	2418	WP_003512645.1	endopeptidase La	-
G6M86_RS08485 (G6M86_08475)	clpX	1714633..1715910 (-)	1278	WP_003512644.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
G6M86_RS08490 (G6M86_08480)	clpP	1716202..1716834 (-)	633	WP_003496491.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
G6M86_RS08495 (G6M86_08485)	-	1717290..1718537 (+)	1248	WP_065704702.1	sensor domain-containing diguanylate cyclase	-
G6M86_RS08500 (G6M86_08490)	-	1718623..1719876 (+)	1254	WP_065704705.1	cytochrome P450	-
G6M86_RS08505 (G6M86_08495)	-	1719935..1720303 (-)	369	WP_003512641.1	cupin domain-containing protein	-

Sequence

Protein

• Length: 425 a.a.
• Molecular weight: 46909.83 Da
• Isoelectric Point: 5.0788

>NTDB_id=373329 G6M86_RS08485 WP_003512644.1 1714633..1715910(-) (clpX) [Agrobacterium tumefaciens strain Q15/94]
MSKVSGSNGGDSKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKTSMVKSREGVPTPQDIIKILDEYV
IGQKQAKKILSVAVHNHYKRLAHASKNGDVELAKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDV
ENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV
DTTNILFICGGAFAGLDKIISARGEKTSIGFGATVKAEDDRRVGEVLRELEPEDLVKFGLIPEFIGRLPVLATLEDLDED
ALIQILSEPKNALVKQYQRLFEMEDVELTFHEDALREIARRAITRKTGARGLRSIMEKILLDTMFELPTLEGVREVVISN
DVVSGIARPLYIYADRQEEKANVSA

Nucleotide

• Length: 1278 bp

>NTDB_id=373329 G6M86_RS08485 WP_003512644.1 1714633..1715910(-) (clpX) [Agrobacterium tumefaciens strain Q15/94]
ATGAGCAAAGTCAGCGGCAGCAACGGCGGCGACTCTAAGAATACACTCTATTGTTCATTCTGCGGCAAGAGCCAGCACGA
AGTCCGGAAACTCATTGCCGGACCGACGGTATTCATCTGCGATGAATGCGTCGAATTGTGCATGGACATCATCCGCGAGG
AGAACAAGACGTCGATGGTGAAGTCGCGCGAGGGTGTTCCAACCCCGCAGGACATCATCAAGATCCTCGACGAATACGTC
ATCGGCCAGAAGCAGGCGAAAAAGATCCTGTCGGTGGCCGTTCACAACCATTACAAGCGCCTCGCGCACGCCTCCAAGAA
TGGCGATGTCGAGCTTGCGAAGTCGAACATCATGCTCGTCGGTCCGACGGGTTGCGGCAAGACCTATCTTGCCCAGACGC
TCGCCCGCATCATCGACGTTCCCTTCACGATGGCAGACGCAACGACGCTGACCGAAGCCGGTTATGTCGGCGAGGACGTG
GAAAACATCATCCTGAAGCTGTTGCAGGCTGCGGATTACAATGTTGAGCGCGCCCAGCGCGGCATCGTCTATATCGACGA
AGTCGACAAGATCTCCCGCAAGTCGGATAACCCGTCGATCACGCGTGACGTGTCGGGCGAGGGCGTTCAGCAGGCGCTTC
TGAAGATCATGGAAGGCACGGTCGCTTCCGTTCCGCCGCAGGGCGGCCGCAAGCATCCGCAGCAGGAATTCCTGCAGGTG
GATACGACCAACATCCTGTTCATCTGCGGCGGCGCGTTTGCCGGCCTGGACAAGATCATCTCGGCCAGGGGCGAAAAGAC
CTCGATTGGCTTCGGTGCGACCGTCAAGGCGGAAGACGATCGCCGCGTTGGCGAGGTGCTGCGCGAACTGGAGCCGGAAG
ATCTGGTGAAATTCGGTCTTATTCCGGAATTCATCGGCCGTCTGCCGGTTCTGGCTACGCTGGAGGACCTTGACGAGGAT
GCGCTGATCCAGATCCTGTCCGAGCCGAAGAACGCGCTGGTCAAGCAGTACCAGCGTCTGTTCGAGATGGAAGATGTGGA
ACTGACCTTCCACGAGGACGCGTTGCGCGAGATTGCCCGCCGGGCGATTACCCGCAAGACGGGTGCCCGCGGTCTGCGCT
CGATCATGGAAAAGATCCTTCTGGATACCATGTTCGAACTGCCGACGCTGGAAGGCGTGCGCGAAGTGGTGATCTCCAAC
GATGTCGTCAGCGGCATCGCTCGCCCGCTCTACATCTATGCGGATCGTCAGGAAGAAAAGGCCAATGTTTCGGCTTGA

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (16-53)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (317-389)

• AAA domain (Cdc48 subfamily) (AAA_2) (114-310)

3D structure

• AlphaFold DB: A0A1B9V328

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.657	93.882	0.588
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.335	94.824	0.525