Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ST64987_RS00220 Genome accession   NZ_CP049053
Coordinates   31808..32581 (+) Length   257 a.a.
NCBI ID   WP_167401404.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST64987     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 26808..37581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST64987_RS00200 (ST64987_0023) - 26936..28360 (+) 1425 WP_046206377.1 CHAP domain-containing protein -
  ST64987_RS00205 (ST64987_0024) - 28574..29539 (+) 966 WP_002948994.1 ribose-phosphate diphosphokinase -
  ST64987_RS00210 - 29588..30433 (-) 846 Protein_20 transposase -
  ST64987_RS00215 (ST64987_0025) - 30646..31821 (+) 1176 WP_014607821.1 pyridoxal phosphate-dependent aminotransferase -
  ST64987_RS00220 (ST64987_0026) recO 31808..32581 (+) 774 WP_167401404.1 DNA repair protein RecO Machinery gene
  ST64987_RS00225 (ST64987_0027) plsX 32797..33801 (+) 1005 WP_014727281.1 phosphate acyltransferase PlsX -
  ST64987_RS00230 (ST64987_0028) - 33801..34046 (+) 246 WP_002949008.1 phosphopantetheine-binding protein -
  ST64987_RS00235 (ST64987_0029) purC 34331..35038 (+) 708 WP_011680589.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29860.08 Da        Isoelectric Point: 5.0766

>NTDB_id=371860 ST64987_RS00220 WP_167401404.1 31808..32581(+) (recO) [Streptococcus thermophilus strain ST64987]
MQKLESRGFILFNRNYRENDKLVKIFTKQAGKRMFFVRGGGSGKLSAVIQPLNIAEFMMTVNDEGLSFIEDYSQAESFKE
ITSDIFKLSYATYLAALTDAAITDGVVDAQLFAFLEKTLVLMEEGLDYEILTNIFEIQVLDRFGVRLNFHECVFCHRVGL
PFDFSYKFSGLLCPNHYEEDERRSHLDPNVPYLLDRFQGLSFEELRSISVKDEMKRKLRQFIDELYDNYVGIHLKSKKFI
DNLNSWGHIMSKEDNAD

Nucleotide


Download         Length: 774 bp        

>NTDB_id=371860 ST64987_RS00220 WP_167401404.1 31808..32581(+) (recO) [Streptococcus thermophilus strain ST64987]
ATGCAGAAGCTTGAGAGTAGGGGGTTTATCCTCTTCAATCGTAATTATCGTGAGAATGATAAGCTGGTTAAGATTTTTAC
TAAACAAGCTGGTAAACGGATGTTTTTTGTTAGAGGTGGTGGGTCAGGTAAATTGAGTGCTGTGATTCAACCTTTAAACA
TCGCTGAATTTATGATGACTGTAAATGATGAAGGTTTATCTTTCATAGAGGATTATAGTCAGGCAGAGTCTTTTAAGGAA
ATTACAAGTGATATTTTTAAACTGTCTTACGCGACCTATTTAGCTGCCTTGACTGATGCTGCTATTACTGACGGTGTGGT
AGATGCACAATTATTTGCATTTTTAGAGAAAACCCTTGTGTTAATGGAAGAGGGCTTAGATTATGAAATATTGACTAATA
TCTTTGAGATTCAAGTTTTGGACCGTTTTGGCGTACGATTGAATTTTCATGAATGTGTCTTTTGTCATCGTGTTGGTCTT
CCTTTTGATTTCTCGTATAAGTTCTCAGGTTTACTTTGTCCCAATCATTACGAAGAAGATGAAAGGCGTAGTCATTTGGA
CCCTAATGTGCCTTATCTTTTGGATCGTTTCCAGGGTCTTTCGTTTGAAGAATTGAGAAGCATATCTGTTAAGGATGAAA
TGAAACGAAAGTTGAGACAATTTATTGATGAGCTTTATGATAATTATGTTGGGATTCATCTTAAAAGCAAGAAGTTTATT
GATAATCTAAATTCTTGGGGTCATATTATGAGTAAAGAAGATAATGCTGATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

61.66

98.444

0.607

Multiple sequence alignment