Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   FI644_RS24450 Genome accession   NZ_CP041305
Coordinates   4862722..4863975 (-) Length   417 a.a.
NCBI ID   WP_053475734.1    Uniprot ID   -
Organism   Cytobacillus solani strain 5L6     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 4857722..4868975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FI644_RS24430 spoVS 4857977..4858237 (-) 261 WP_009791522.1 stage V sporulation protein SpoVS -
  FI644_RS24435 - 4858726..4859523 (-) 798 WP_053475737.1 TIGR00282 family metallophosphoesterase -
  FI644_RS24440 rny 4859629..4861194 (-) 1566 WP_053475736.1 ribonuclease Y -
  FI644_RS24445 recA 4861446..4862486 (-) 1041 WP_053475735.1 recombinase RecA Machinery gene
  FI644_RS24450 cinA 4862722..4863975 (-) 1254 WP_053475734.1 competence/damage-inducible protein A Machinery gene
  FI644_RS24455 pgsA 4864018..4864596 (-) 579 WP_053475733.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FI644_RS24460 - 4864648..4865562 (-) 915 WP_056684204.1 RodZ domain-containing protein -
  FI644_RS24465 - 4865585..4866376 (-) 792 WP_142108921.1 DUF3388 domain-containing protein -
  FI644_RS24470 - 4866536..4866796 (-) 261 WP_142108922.1 DUF3243 domain-containing protein -
  FI644_RS24475 - 4866904..4867626 (-) 723 WP_053475729.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 46055.95 Da        Isoelectric Point: 5.1190

>NTDB_id=371176 FI644_RS24450 WP_053475734.1 4862722..4863975(-) (cinA) [Cytobacillus solani strain 5L6]
MNAEIIAVGSELLLGQIVNTNARFLSRQLADLGINVFYHTCVGDNPDRLKAVIKMAEERSNLLIFTGGLGPTKDDLTKET
IAKHVNKKLIMNNEALQSIELYFERTNRQMTENNKKQAIVLEDSHILPNDHGMAPGMLLDGGNHTYMLLPGPPKEMEPMF
LKYGYPALRSLLLEEDVILSRVLRFFGIGEAMLETEIEDLIDAQTNPTIAPLASDGEVTLRLTAKYEQMDTALRLLDETE
NNILSRVGEYFYGYDETSLMRELIKHIKEKKLTIACAESLTGGMFQQEFTAIPGAGDLLKGGVVCYTNEVKTNVLNVQKS
TIAENGVVSEQCARELAKNVASLMNADIGISFTGVAGPDELEGKPVGTVYIGISIKNEPVQVEKLNFGGTREAIRVRSVK
YGCHFLIKRLNGSQNAK

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=371176 FI644_RS24450 WP_053475734.1 4862722..4863975(-) (cinA) [Cytobacillus solani strain 5L6]
ATGAATGCAGAAATAATCGCAGTTGGTTCTGAATTATTGCTTGGTCAAATTGTTAATACAAATGCGCGCTTTTTGTCCAG
GCAGCTTGCCGATTTAGGGATTAATGTTTTTTATCATACATGTGTTGGTGATAACCCTGATCGCCTTAAAGCAGTGATTA
AAATGGCAGAGGAGCGTTCGAATCTTCTTATATTTACTGGAGGATTAGGACCAACAAAAGATGACTTAACAAAGGAAACG
ATCGCAAAGCATGTAAATAAAAAACTGATTATGAATAATGAGGCTCTTCAGTCGATTGAACTTTATTTCGAGCGCACGAA
TCGACAGATGACGGAAAATAATAAGAAGCAGGCAATTGTTTTAGAGGATTCACATATTTTGCCGAATGATCATGGGATGG
CTCCTGGAATGTTGCTTGATGGTGGAAACCATACCTATATGCTTCTACCCGGACCACCGAAAGAAATGGAACCAATGTTT
TTGAAATATGGCTACCCAGCTCTTCGTTCCTTGCTACTAGAGGAAGATGTGATCCTTTCCCGTGTATTAAGATTTTTTGG
GATTGGAGAAGCGATGCTCGAAACAGAAATTGAAGATTTAATTGATGCACAGACGAATCCGACGATAGCGCCACTTGCAT
CGGATGGGGAAGTAACTCTTCGTTTAACAGCCAAGTATGAGCAAATGGATACAGCTTTAAGACTTCTAGATGAGACTGAA
AATAACATTCTCTCTCGAGTCGGAGAATATTTCTATGGATATGATGAAACTTCCTTAATGCGTGAGTTAATTAAACATAT
TAAGGAAAAAAAGCTGACAATTGCTTGCGCTGAGAGTCTGACAGGAGGTATGTTCCAGCAGGAGTTTACAGCAATTCCTG
GGGCAGGAGACCTTCTTAAAGGCGGTGTTGTTTGTTATACAAATGAAGTTAAAACAAATGTGCTAAACGTCCAGAAATCA
ACAATTGCTGAAAATGGTGTCGTAAGTGAGCAATGTGCACGTGAGTTAGCAAAAAACGTTGCCTCCCTTATGAACGCGGA
TATTGGCATTAGCTTTACAGGCGTTGCGGGTCCTGATGAATTAGAAGGCAAACCAGTTGGAACTGTATACATTGGTATTT
CAATAAAGAATGAGCCTGTTCAAGTTGAAAAGCTAAATTTTGGCGGAACAAGAGAAGCCATCCGGGTAAGAAGTGTAAAG
TATGGATGTCATTTTTTAATAAAGAGATTAAATGGAAGTCAGAATGCCAAATAG

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

61.029

97.842

0.597
  cinA Streptococcus mitis SK321

45

100

0.453
  cinA Streptococcus pneumoniae TIGR4

45

100

0.453
  cinA Streptococcus mitis NCTC 12261

44.762

100

0.451
  cinA Streptococcus pneumoniae Rx1

44.524

100

0.448
  cinA Streptococcus pneumoniae R6

44.524

100

0.448
  cinA Streptococcus pneumoniae D39

44.286

100

0.446
  cinA Streptococcus mutans UA159

43.914

100

0.441
  cinA Streptococcus suis isolate S10

38.677

94.245

0.365

Multiple sequence alignment