Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FJ709_RS01465 Genome accession   NZ_CP041216
Coordinates   347215..348483 (-) Length   422 a.a.
NCBI ID   WP_226412765.1    Uniprot ID   -
Organism   Shewanella glacialimarina strain TZS-4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 342215..353483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJ709_RS01440 (FJ709_01440) mutT 344153..344551 (-) 399 WP_226412755.1 8-oxo-dGTP diphosphatase MutT -
  FJ709_RS01445 (FJ709_01445) yacG 344582..344809 (-) 228 WP_226412757.1 DNA gyrase inhibitor YacG -
  FJ709_RS01450 (FJ709_01450) zapD 344863..345597 (-) 735 WP_226412759.1 cell division protein ZapD -
  FJ709_RS01455 (FJ709_01455) coaE 345590..346207 (-) 618 WP_226412761.1 dephospho-CoA kinase -
  FJ709_RS01460 (FJ709_01460) pilD 346235..347164 (-) 930 WP_226412763.1 A24 family peptidase Machinery gene
  FJ709_RS01465 (FJ709_01465) pilC 347215..348483 (-) 1269 WP_226412765.1 type II secretion system F family protein Machinery gene
  FJ709_RS01470 (FJ709_01470) pilB 348581..350293 (-) 1713 WP_226412767.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FJ709_RS01475 (FJ709_01475) - 350382..350801 (-) 420 WP_319002888.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  FJ709_RS01480 (FJ709_01480) nadC 351613..352491 (-) 879 WP_226412769.1 carboxylating nicotinate-nucleotide diphosphorylase -
  FJ709_RS01485 (FJ709_01485) ampD 352775..353356 (+) 582 WP_226412771.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45792.92 Da        Isoelectric Point: 10.2034

>NTDB_id=370603 FJ709_RS01465 WP_226412765.1 347215..348483(-) (pilC) [Shewanella glacialimarina strain TZS-4]
MATAAAKRKSRSSKKAVKHQPKVYTFEWKGTNNDGKKTSGELRGHTIAEIRTILKGQGVSPKSVRKKATPLFKTEKSISA
MDIAMITRQIATMLAAGVPLVTTIELLGRGHEKAKVRELLGGILSDVQSGIPLSDALRPHRRYFDELYVDLVGAGEHSGS
LDAVFDRIATYREKSEALKSKIKKAMFYPAAVVIVAIAVTSLLLLFVVPQFEEIFNGFGAELPAFTQFVLGISRALQSSW
YIIGAMIFAVIFLFIRAHRNSQIVRDKVDVLILKTPAVGDILHKGAMARFARTLSTTFAAGVPLIDGLESAAGASGNAVY
RKALLKVRQEVMSGMQMNVAMRTTGLFPDMLIQMVMIGEESGGLDDMLNKVADIYEMQVDDAVDALSSLIEPIMMVVIGT
VVGGLIVAMYLPIFQMGKVVGG

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=370603 FJ709_RS01465 WP_226412765.1 347215..348483(-) (pilC) [Shewanella glacialimarina strain TZS-4]
ATGGCAACCGCTGCAGCGAAAAGAAAATCCCGTTCAAGTAAAAAGGCTGTTAAACATCAGCCTAAGGTATATACCTTTGA
GTGGAAAGGCACCAATAACGATGGCAAAAAAACTTCAGGTGAGCTCAGGGGTCACACGATAGCGGAAATAAGAACTATTC
TAAAAGGCCAGGGGGTCTCCCCTAAAAGCGTTAGAAAGAAAGCTACACCACTGTTTAAAACTGAAAAAAGCATCAGCGCA
ATGGACATTGCTATGATCACTCGCCAAATAGCTACCATGTTAGCTGCTGGGGTGCCTTTAGTGACCACCATAGAGCTATT
GGGTCGCGGTCATGAAAAAGCTAAGGTGCGTGAATTACTCGGCGGAATTTTATCAGATGTGCAATCGGGTATTCCGTTAT
CTGATGCACTTCGACCTCATAGACGCTATTTTGATGAACTTTATGTTGATTTGGTTGGCGCAGGGGAACACTCTGGTTCT
CTTGATGCGGTATTTGACCGTATTGCGACTTATCGTGAAAAGTCTGAAGCACTGAAATCTAAAATCAAAAAGGCCATGTT
TTATCCAGCCGCTGTGGTTATTGTTGCCATAGCGGTAACTTCGTTACTACTACTGTTTGTTGTACCACAATTTGAAGAGA
TTTTTAATGGCTTCGGCGCTGAACTACCGGCATTTACTCAATTTGTATTAGGCATTTCCAGAGCGCTGCAATCGTCTTGG
TACATTATTGGCGCTATGATTTTTGCTGTGATTTTTTTGTTTATTAGAGCACACAGAAATTCACAAATTGTGCGGGACAA
GGTCGATGTATTAATTTTAAAAACCCCAGCTGTTGGCGATATTTTGCACAAGGGTGCCATGGCCCGTTTTGCCCGTACTT
TATCCACGACCTTTGCTGCTGGTGTGCCACTGATTGATGGTTTAGAGTCTGCTGCTGGCGCTTCAGGTAACGCTGTGTAT
CGCAAAGCTTTGTTAAAAGTTCGACAAGAAGTCATGTCCGGCATGCAAATGAATGTTGCTATGCGAACAACAGGGCTATT
TCCCGACATGTTAATCCAAATGGTGATGATTGGTGAAGAATCTGGTGGTCTAGATGATATGCTGAATAAAGTCGCTGATA
TTTATGAGATGCAGGTTGATGATGCAGTTGACGCATTATCTAGCTTAATTGAGCCAATTATGATGGTGGTTATTGGTACC
GTTGTTGGCGGCTTAATTGTCGCCATGTATTTACCTATATTCCAAATGGGTAAAGTGGTAGGTGGGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(87-209)

Type II secretion system (T2SS), protein F (T2SSF)

(290-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.186

96.682

0.514
  pilC Acinetobacter baumannii D1279779

49.14

96.445

0.474
  pilC Legionella pneumophila strain ERS1305867

49.01

95.735

0.469
  pilC Acinetobacter baylyi ADP1

49.37

94.076

0.464
  pilC Vibrio cholerae strain A1552

47.073

97.156

0.457
  pilC Vibrio campbellii strain DS40M4

45.074

96.209

0.434
  pilG Neisseria meningitidis 44/76-A

42.289

95.261

0.403
  pilG Neisseria gonorrhoeae MS11

42.289

95.261

0.403

Multiple sequence alignment