Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   DVH16_RS07430 Genome accession   NZ_CP041213
Coordinates   1451386..1452630 (+) Length   414 a.a.
NCBI ID   WP_003731444.1    Uniprot ID   A0A5L2A178
Organism   Listeria monocytogenes strain LMP18-H8393     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1446386..1457630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DVH16_RS07410 (DVH16_07410) - 1447560..1448846 (+) 1287 WP_003727460.1 pitrilysin family protein -
  DVH16_RS07415 (DVH16_07415) - 1448938..1449669 (+) 732 WP_003727459.1 SDR family oxidoreductase -
  DVH16_RS07420 (DVH16_07420) - 1449720..1450649 (+) 930 WP_003727458.1 RodZ family helix-turn-helix domain-containing protein -
  DVH16_RS07425 (DVH16_07425) pgsA 1450740..1451318 (+) 579 WP_003723921.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DVH16_RS07430 (DVH16_07430) cinA 1451386..1452630 (+) 1245 WP_003731444.1 competence/damage-inducible protein A Machinery gene
  DVH16_RS07435 (DVH16_07435) recA 1452903..1453949 (+) 1047 WP_003725961.1 recombinase RecA Machinery gene
  DVH16_RS07440 (DVH16_07440) rny 1454250..1455812 (+) 1563 WP_003721904.1 ribonuclease Y -
  DVH16_RS07445 (DVH16_07445) - 1455927..1456424 (+) 498 WP_009918755.1 GNAT family N-acetyltransferase -
  DVH16_RS07450 (DVH16_07450) - 1456430..1457233 (+) 804 WP_003721906.1 TIGR00282 family metallophosphoesterase -
  DVH16_RS07455 (DVH16_07455) - 1457250..1457612 (+) 363 WP_014929949.1 YlbF family regulator -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45733.97 Da        Isoelectric Point: 4.6592

>NTDB_id=370574 DVH16_RS07430 WP_003731444.1 1451386..1452630(+) (cinA) [Listeria monocytogenes strain LMP18-H8393]
MASAEIIAVGTELLLGQIVNSNAAFISQELAADGIYVYHHTVVGDNPTRLKEVIEIAENRSDILIFTGGLGPTEDDITKQ
ILAAHLQKQLVEDEYHMNKINEYFTSRNRTMTENNKLQAVIIEDSIVLNNDFGFAAGMYLRENNHTYVLLPGPPSEMKPM
FTSYANPLLLSESGDQNILESKIMRFFGIGESQLAADLNDLIVTQVNPTIATYAGDNEVVVRITATAKTKEEASRLVKET
EEEILRREGTFLYGYGEVSLSELVTAMLLEKELTISAAESFTAGLFQAEIARFPGISKIFKGGMVTYSEETKQSILQVSP
QVIKEKGVVSAECAKEMAENVIRLCKTDIGISFTGVAGPDSLEGHPAGTIWIGLSVKGYETEAFQFVYGRDRNHNRRRAV
KQGFQLIKQFLDAN

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=370574 DVH16_RS07430 WP_003731444.1 1451386..1452630(+) (cinA) [Listeria monocytogenes strain LMP18-H8393]
ATGGCAAGTGCAGAAATCATTGCAGTAGGAACAGAACTATTACTAGGGCAAATTGTTAATTCTAATGCTGCGTTTATTTC
ACAAGAATTAGCTGCTGACGGAATATATGTATATCATCATACGGTAGTTGGAGATAACCCAACACGTTTAAAAGAAGTAA
TCGAAATCGCTGAAAACCGAAGTGACATTTTAATCTTTACCGGCGGACTTGGACCGACTGAGGATGATATTACAAAACAA
ATCTTGGCTGCTCATCTACAAAAGCAATTAGTGGAAGATGAATACCATATGAATAAAATTAATGAGTATTTCACTTCTAG
GAATAGGACTATGACCGAAAATAATAAATTACAAGCGGTTATTATTGAAGATTCCATCGTATTAAATAATGATTTTGGCT
TTGCGGCTGGAATGTACTTAAGAGAAAACAATCATACTTACGTTTTGCTACCAGGTCCACCATCTGAAATGAAACCAATG
TTTACAAGCTATGCTAACCCATTACTTTTAAGCGAAAGTGGCGATCAAAACATTTTAGAATCCAAAATTATGCGCTTTTT
TGGAATTGGAGAGTCACAATTAGCTGCTGATTTAAATGATTTGATTGTCACGCAAGTCAACCCGACGATTGCGACATATG
CTGGTGATAATGAAGTTGTGGTCCGTATCACAGCGACAGCTAAAACAAAAGAAGAAGCAAGCAGACTTGTGAAGGAAACC
GAGGAAGAAATATTGCGCCGAGAAGGTACCTTTTTATATGGATATGGAGAGGTGTCATTGTCTGAATTAGTTACGGCGAT
GTTACTTGAAAAAGAACTTACCATCTCTGCCGCAGAAAGTTTCACTGCTGGTTTGTTCCAAGCAGAAATTGCCCGCTTTC
CTGGCATTTCGAAAATTTTCAAAGGTGGTATGGTGACATACAGTGAAGAAACAAAACAATCTATATTACAAGTATCTCCC
CAAGTAATAAAAGAAAAAGGCGTTGTTAGTGCGGAATGTGCGAAGGAAATGGCTGAAAATGTAATCCGCCTTTGTAAGAC
GGATATTGGAATCAGTTTTACAGGTGTTGCAGGTCCAGATAGTTTAGAAGGTCATCCTGCTGGCACTATTTGGATTGGAC
TAAGCGTTAAAGGTTATGAAACAGAGGCTTTTCAGTTTGTCTATGGAAGAGATCGAAACCATAATCGCCGCCGTGCAGTA
AAACAAGGATTTCAGTTAATTAAACAATTTTTAGACGCAAATTAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5L2A178

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.589

98.792

0.51
  cinA Streptococcus pneumoniae TIGR4

49.282

100

0.498
  cinA Streptococcus mitis SK321

49.043

100

0.495
  cinA Streptococcus mitis NCTC 12261

48.804

100

0.493
  cinA Streptococcus pneumoniae Rx1

48.565

100

0.49
  cinA Streptococcus pneumoniae R6

48.565

100

0.49
  cinA Streptococcus pneumoniae D39

48.325

100

0.488
  cinA Streptococcus mutans UA159

48.301

99.517

0.481
  cinA Streptococcus suis isolate S10

38.592

99.517

0.384

Multiple sequence alignment