Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FJN14_RS13200 Genome accession   NZ_CP041170
Coordinates   3071407..3072615 (+) Length   402 a.a.
NCBI ID   WP_141154429.1    Uniprot ID   -
Organism   Alteromonas mediterranea strain PT15     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3066407..3077615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJN14_RS13175 (FJN14_13175) ampE 3067333..3068202 (-) 870 WP_015067808.1 beta-lactamase regulator AmpE -
  FJN14_RS13180 (FJN14_13180) ampD 3068233..3068769 (-) 537 WP_141154426.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  FJN14_RS13185 (FJN14_13185) - 3068945..3069463 (+) 519 WP_012519426.1 TIGR02281 family clan AA aspartic protease -
  FJN14_RS13190 (FJN14_13190) nadC 3069483..3070337 (+) 855 WP_141154427.1 carboxylating nicotinate-nucleotide diphosphorylase -
  FJN14_RS18655 (FJN14_13195) - 3070873..3071316 (+) 444 WP_141154428.1 pilin -
  FJN14_RS13200 (FJN14_13200) pilC 3071407..3072615 (+) 1209 WP_141154429.1 type II secretion system F family protein Machinery gene
  FJN14_RS13205 (FJN14_13205) pilD 3072733..3073626 (+) 894 WP_141154430.1 prepilin peptidase Machinery gene
  FJN14_RS13210 (FJN14_13210) coaE 3073648..3074262 (+) 615 WP_141154431.1 dephospho-CoA kinase -
  FJN14_RS13215 (FJN14_13215) zapD 3074476..3075228 (+) 753 WP_015067815.1 cell division protein ZapD -
  FJN14_RS13220 (FJN14_13220) yacG 3075319..3075546 (+) 228 WP_012519434.1 DNA gyrase inhibitor YacG -
  FJN14_RS13225 (FJN14_13225) - 3075739..3076611 (+) 873 WP_141154432.1 aspartoacylase -
  FJN14_RS13230 (FJN14_13230) mutT 3076703..3077086 (-) 384 WP_020746438.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43716.20 Da        Isoelectric Point: 9.5766

>NTDB_id=370100 FJN14_RS13200 WP_141154429.1 3071407..3072615(+) (pilC) [Alteromonas mediterranea strain PT15]
MAKAAITFEWQGKNRQGQSQKGELSATSIAEAKSALRRQGISANKVKRQATPLFGRSQKIKPSDVSVTSRQIATMLAAGV
TLIQSLDMIAQGHANPSMRKLLGEITDEVKSGNPLSSALRKHPLYFDDLYCDLVYTGEQSGALETIYDRIATYKEKAEAL
KSKIKKAMFYPIAVLVVAFIVTTILLIFVVPQFEEIFSSFGAELPAFTQFVLAISRFVQDYGIFIAMGVAAAGFMFVRAH
RRSQKLRDTVDRNILKIPVIGEILKKASIARFTRTLATTFAAGVPLIGALESAAGASGNAVYRDAILYIRKEVAGGMPMY
VAMRATQVFPDMVTQMIAIGEESGSVDEMLSKIATIYEAEVDDMVDGLTSLLEPMIMAVLGVVIGGLIVAMYLPIFQMGN
VV

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=370100 FJN14_RS13200 WP_141154429.1 3071407..3072615(+) (pilC) [Alteromonas mediterranea strain PT15]
ATGGCTAAAGCAGCAATAACTTTTGAATGGCAAGGTAAAAATAGACAAGGTCAAAGTCAAAAAGGTGAGCTCTCAGCCAC
AAGTATTGCTGAAGCAAAATCTGCGCTCAGACGACAAGGTATATCTGCAAACAAGGTGAAGAGACAAGCGACTCCATTAT
TTGGTCGCTCCCAGAAAATTAAACCATCTGATGTTTCAGTAACGTCTCGGCAAATCGCCACCATGCTTGCCGCTGGTGTT
ACGCTAATTCAGTCACTAGACATGATTGCCCAAGGTCACGCAAACCCTTCCATGCGAAAACTACTTGGTGAAATCACCGA
TGAAGTCAAATCCGGTAACCCACTTTCATCAGCACTTAGAAAGCACCCCCTCTATTTTGATGATTTATATTGTGACTTGG
TTTACACCGGTGAACAGTCAGGTGCCCTTGAAACCATTTACGACCGTATTGCCACCTATAAAGAAAAGGCTGAAGCACTA
AAATCAAAAATCAAAAAAGCGATGTTTTACCCTATCGCGGTTTTGGTTGTTGCTTTTATTGTTACGACTATTCTGCTTAT
TTTCGTTGTGCCTCAGTTTGAAGAAATTTTTAGCAGCTTTGGCGCTGAACTCCCTGCGTTTACCCAGTTCGTACTGGCTA
TATCGCGGTTTGTACAGGATTACGGTATTTTTATCGCCATGGGCGTGGCAGCCGCAGGCTTTATGTTTGTGCGGGCACAC
AGACGTAGCCAAAAACTGCGCGATACGGTAGACCGCAATATTTTAAAAATTCCTGTTATCGGCGAAATACTCAAAAAAGC
CAGTATCGCACGCTTTACCCGAACCCTTGCCACCACCTTTGCGGCAGGTGTACCGCTAATAGGCGCGTTAGAGTCGGCAG
CGGGTGCATCGGGTAACGCTGTTTATCGAGACGCGATACTATATATACGCAAAGAAGTGGCTGGCGGTATGCCAATGTAC
GTTGCCATGCGCGCAACCCAGGTATTTCCAGACATGGTGACTCAAATGATAGCCATAGGTGAAGAGTCTGGCTCTGTCGA
TGAGATGCTAAGTAAAATTGCCACCATTTACGAAGCAGAAGTTGATGACATGGTAGACGGCTTAACCAGCTTGCTTGAGC
CTATGATCATGGCCGTACTTGGCGTGGTTATTGGCGGCTTGATTGTGGCCATGTACCTGCCTATATTCCAGATGGGTAAC
GTGGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(272-394)

Type II secretion system (T2SS), protein F (T2SSF)

(69-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.012

100

0.595
  pilC Legionella pneumophila strain ERS1305867

52.25

99.502

0.52
  pilC Acinetobacter baumannii D1279779

52.01

99.005

0.515
  pilC Acinetobacter baylyi ADP1

52.141

98.756

0.515
  pilG Neisseria gonorrhoeae MS11

45.32

100

0.458
  pilC Vibrio cholerae strain A1552

45.844

98.756

0.453
  pilG Neisseria meningitidis 44/76-A

44.554

100

0.448
  pilC Vibrio campbellii strain DS40M4

43.577

98.756

0.43

Multiple sequence alignment