Detailed information NTG0370101

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FJN14_RS13205
• Genome accession: NZ_CP041170
• Coordinates: 3072733..3073626 (+)
• Length: 297 a.a.
• NCBI ID: WP_141154430.1
• Uniprot ID: -
• Organism: Alteromonas mediterranea strain PT15
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3067733..3078626

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FJN14_RS13180 (FJN14_13180)	ampD	3068233..3068769 (-)	537	WP_141154426.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
FJN14_RS13185 (FJN14_13185)	-	3068945..3069463 (+)	519	WP_012519426.1	TIGR02281 family clan AA aspartic protease	-
FJN14_RS13190 (FJN14_13190)	nadC	3069483..3070337 (+)	855	WP_141154427.1	carboxylating nicotinate-nucleotide diphosphorylase	-
FJN14_RS18655 (FJN14_13195)	-	3070873..3071316 (+)	444	WP_141154428.1	pilin	-
FJN14_RS13200 (FJN14_13200)	pilC	3071407..3072615 (+)	1209	WP_141154429.1	type II secretion system F family protein	Machinery gene
FJN14_RS13205 (FJN14_13205)	pilD	3072733..3073626 (+)	894	WP_141154430.1	prepilin peptidase	Machinery gene
FJN14_RS13210 (FJN14_13210)	coaE	3073648..3074262 (+)	615	WP_141154431.1	dephospho-CoA kinase	-
FJN14_RS13215 (FJN14_13215)	zapD	3074476..3075228 (+)	753	WP_015067815.1	cell division protein ZapD	-
FJN14_RS13220 (FJN14_13220)	yacG	3075319..3075546 (+)	228	WP_012519434.1	DNA gyrase inhibitor YacG	-
FJN14_RS13225 (FJN14_13225)	-	3075739..3076611 (+)	873	WP_141154432.1	aspartoacylase	-
FJN14_RS13230 (FJN14_13230)	mutT	3076703..3077086 (-)	384	WP_020746438.1	8-oxo-dGTP diphosphatase MutT	-

Sequence

Protein

• Length: 297 a.a.
• Molecular weight: 32896.92 Da
• Isoelectric Point: 5.8881

>NTDB_id=370101 FJN14_RS13205 WP_141154430.1 3072733..3073626(+) (pilD) [Alteromonas mediterranea strain PT15]
MDAIITLSQLYPAIFYTLIFLVSLMVGSFLNVVIYRLPIMMERSWQQEYQSYFTDSDTSLDTPNAPSQDDTFNLVKPDST
CPRCGHKIRAWENIPVISYLFLRGKCAKCKVGISVRYPLVELFTAIACTFAAYQFGTTPQALWAVVFTYVLVALLFIDLD
KMLLPDQLTLPLLWLGLLLSTQNIFVSTTDAIIGAAAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAALGAFTGWQGLPV
IILLSSLVGAIAGIAIMVVQNKGKSLAIPFGPYLAVAGWLTLLFKAEIITTYLDYVL

Nucleotide

• Length: 894 bp

>NTDB_id=370101 FJN14_RS13205 WP_141154430.1 3072733..3073626(+) (pilD) [Alteromonas mediterranea strain PT15]
ATGGACGCTATAATAACCCTTAGCCAGCTATACCCCGCTATTTTTTATACCCTTATCTTCTTAGTGAGTTTAATGGTTGG
CAGCTTTTTAAATGTAGTGATCTACCGCTTACCCATCATGATGGAGCGCAGCTGGCAGCAGGAATACCAAAGCTACTTTA
CCGACAGTGATACCAGCTTAGATACACCTAACGCTCCATCGCAAGACGATACCTTTAACCTGGTAAAACCAGACAGTACT
TGCCCGCGCTGCGGCCACAAAATTCGCGCATGGGAAAACATTCCAGTAATTAGCTACCTATTTCTAAGGGGCAAATGTGC
CAAGTGCAAGGTAGGTATTTCAGTACGCTATCCGCTGGTTGAGCTTTTCACTGCCATCGCCTGCACCTTCGCAGCCTATC
AGTTTGGCACTACACCTCAAGCGCTTTGGGCCGTGGTTTTTACCTACGTACTCGTGGCTTTGCTATTTATCGACTTAGAT
AAAATGTTGTTGCCCGACCAGCTCACGCTGCCCTTGCTTTGGCTGGGGCTGCTGTTAAGTACTCAAAACATTTTTGTTAG
TACGACCGATGCCATTATTGGCGCGGCGGCAGGCTATTTAAGCTTGTGGTCGGTATATTGGCTATTTAAGCTTGTTACGG
GCAAGGAAGGCATGGGCTATGGCGATTTTAAATTGCTTGCCGCCTTAGGTGCGTTCACAGGCTGGCAAGGGCTCCCCGTT
ATCATCTTACTTTCATCACTGGTGGGCGCCATTGCAGGTATTGCTATTATGGTTGTGCAAAATAAGGGGAAGTCCTTAGC
CATCCCCTTTGGCCCTTACCTTGCTGTAGCAGGGTGGCTTACGCTGCTTTTTAAAGCTGAAATTATCACCACTTACCTTG
ATTATGTGCTTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (146-254)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-135)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	54.138	97.643	0.529
pilD	Vibrio cholerae strain A1552	54.325	97.306	0.529
pilD	Acinetobacter baumannii D1279779	51.613	93.939	0.485
pilD	Acinetobacter nosocomialis M2	51.254	93.939	0.481
pilD	Neisseria gonorrhoeae MS11	50	87.542	0.438