Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   FY143_RS04395 Genome accession   NZ_CP048522
Coordinates   885387..886019 (+) Length   210 a.a.
NCBI ID   WP_111789280.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain Sta004     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 880387..891019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY143_RS04375 (FY143_04345) - 880619..881902 (+) 1284 WP_003512640.1 O-acetylhomoserine aminocarboxypropyltransferase -
  FY143_RS04380 (FY143_04350) - 881918..882286 (+) 369 WP_038490713.1 cupin domain-containing protein -
  FY143_RS04385 (FY143_04355) - 882345..883598 (-) 1254 WP_162706736.1 cytochrome P450 -
  FY143_RS04390 (FY143_04360) - 883684..884931 (-) 1248 WP_111789281.1 sensor domain-containing diguanylate cyclase -
  FY143_RS04395 (FY143_04365) clpP 885387..886019 (+) 633 WP_111789280.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  FY143_RS04400 (FY143_04370) clpX 886311..887588 (+) 1278 WP_003512644.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  FY143_RS04405 (FY143_04375) lon 888001..890418 (+) 2418 WP_003512645.1 endopeptidase La -
  FY143_RS04410 (FY143_04380) hupB 890707..890982 (+) 276 WP_003496481.1 DNA-binding protein HupB -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23286.86 Da        Isoelectric Point: 6.1215

>NTDB_id=369198 FY143_RS04395 WP_111789280.1 885387..886019(+) (clpP) [Agrobacterium tumefaciens strain Sta004]
MKNPVDTAMALVPMVVEQTNRGERSYDIFSRLLKERIIFLTGPVEDQMASLVCAQLLFLEAENPKKEIALYINSPGGVVT
AGMAIYDTMQFIRPAVSTLCVGQAASMGSLLLAAGEKGMRFATPNARIMVHQPSGGFQGQASDIERHARDIIKMKRRLNE
VYVKHTGRTLEEVEKTLDRDHFMDADEAKEWGVIDKILTSRQEMEGAAAN

Nucleotide


Download         Length: 633 bp        

>NTDB_id=369198 FY143_RS04395 WP_111789280.1 885387..886019(+) (clpP) [Agrobacterium tumefaciens strain Sta004]
ATGAAAAATCCAGTTGATACCGCCATGGCTCTGGTGCCGATGGTCGTAGAGCAGACCAATCGCGGCGAACGCTCCTATGA
CATATTTTCCCGTCTTCTCAAGGAACGCATCATTTTCCTCACCGGACCGGTGGAAGACCAGATGGCCTCGCTCGTCTGCG
CGCAGCTGCTTTTCCTCGAGGCTGAAAACCCGAAGAAGGAAATCGCGCTCTACATCAATTCGCCGGGTGGCGTCGTGACC
GCCGGCATGGCGATCTACGATACGATGCAGTTCATCCGCCCTGCCGTTTCGACGCTTTGCGTCGGCCAGGCCGCATCCAT
GGGCTCGCTGCTTCTGGCTGCTGGCGAAAAGGGAATGCGTTTCGCAACTCCGAACGCCCGCATCATGGTGCATCAGCCCT
CCGGCGGCTTCCAGGGGCAGGCTTCGGATATCGAGCGTCACGCCCGCGACATCATCAAAATGAAGCGTCGCCTTAATGAA
GTCTACGTGAAGCACACCGGCCGTACGCTGGAAGAGGTTGAAAAAACCCTTGATCGCGACCACTTCATGGATGCCGACGA
GGCCAAGGAATGGGGTGTGATCGACAAGATCCTCACCTCGCGCCAGGAAATGGAAGGCGCCGCCGCGAATTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(21-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

60.513

92.857

0.562
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.447

89.524

0.514
  clpP Lactococcus lactis subsp. cremoris KW2

52.632

90.476

0.476
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.053

90.476

0.462
  clpP Streptococcus mutans UA159

49.231

92.857

0.457
  clpP Streptococcus pneumoniae TIGR4

49.223

91.905

0.452
  clpP Streptococcus pneumoniae Rx1

49.223

91.905

0.452
  clpP Streptococcus pneumoniae D39

49.223

91.905

0.452
  clpP Streptococcus pneumoniae R6

49.223

91.905

0.452
  clpP Streptococcus pyogenes JRS4

48.969

92.381

0.452
  clpP Streptococcus pyogenes MGAS315

48.969

92.381

0.452
  clpP Streptococcus thermophilus LMG 18311

48.969

92.381

0.452
  clpP Streptococcus thermophilus LMD-9

48.969

92.381

0.452