Detailed information NTG0369199

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: FY143_RS04400
• Genome accession: NZ_CP048522
• Coordinates: 886311..887588 (+)
• Length: 425 a.a.
• NCBI ID: WP_003512644.1
• Uniprot ID: A0A1B9V328
• Organism: Agrobacterium tumefaciens strain Sta004
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 881311..892588

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FY143_RS04380 (FY143_04350)	-	881918..882286 (+)	369	WP_038490713.1	cupin domain-containing protein	-
FY143_RS04385 (FY143_04355)	-	882345..883598 (-)	1254	WP_162706736.1	cytochrome P450	-
FY143_RS04390 (FY143_04360)	-	883684..884931 (-)	1248	WP_111789281.1	sensor domain-containing diguanylate cyclase	-
FY143_RS04395 (FY143_04365)	clpP	885387..886019 (+)	633	WP_111789280.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
FY143_RS04400 (FY143_04370)	clpX	886311..887588 (+)	1278	WP_003512644.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
FY143_RS04405 (FY143_04375)	lon	888001..890418 (+)	2418	WP_003512645.1	endopeptidase La	-
FY143_RS04410 (FY143_04380)	hupB	890707..890982 (+)	276	WP_003496481.1	DNA-binding protein HupB	-

Sequence

Protein

• Length: 425 a.a.
• Molecular weight: 46909.83 Da
• Isoelectric Point: 5.0788

>NTDB_id=369199 FY143_RS04400 WP_003512644.1 886311..887588(+) (clpX) [Agrobacterium tumefaciens strain Sta004]
MSKVSGSNGGDSKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKTSMVKSREGVPTPQDIIKILDEYV
IGQKQAKKILSVAVHNHYKRLAHASKNGDVELAKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDV
ENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV
DTTNILFICGGAFAGLDKIISARGEKTSIGFGATVKAEDDRRVGEVLRELEPEDLVKFGLIPEFIGRLPVLATLEDLDED
ALIQILSEPKNALVKQYQRLFEMEDVELTFHEDALREIARRAITRKTGARGLRSIMEKILLDTMFELPTLEGVREVVISN
DVVSGIARPLYIYADRQEEKANVSA

Nucleotide

• Length: 1278 bp

>NTDB_id=369199 FY143_RS04400 WP_003512644.1 886311..887588(+) (clpX) [Agrobacterium tumefaciens strain Sta004]
ATGAGCAAAGTCAGCGGCAGCAACGGCGGCGACTCTAAGAATACACTCTATTGTTCATTCTGCGGCAAGAGCCAGCACGA
AGTCCGGAAACTCATTGCCGGACCGACGGTATTCATCTGCGATGAATGCGTCGAATTGTGCATGGACATCATCCGCGAGG
AGAACAAGACGTCGATGGTGAAGTCGCGCGAGGGTGTTCCCACCCCGCAGGACATCATCAAGATCCTCGACGAATACGTC
ATCGGCCAGAAGCAGGCGAAAAAGATCCTGTCGGTGGCCGTTCACAACCATTACAAGCGCCTTGCGCACGCCTCCAAGAA
TGGCGATGTCGAGCTTGCGAAGTCGAACATCATGCTCGTCGGTCCGACGGGTTGCGGCAAGACCTATCTTGCCCAGACGC
TCGCCCGCATCATCGACGTTCCCTTCACGATGGCGGACGCAACGACGCTGACCGAAGCCGGTTATGTCGGCGAGGACGTG
GAAAACATCATCCTGAAGCTGTTGCAGGCTGCGGATTACAATGTCGAGCGCGCCCAGCGTGGCATCGTCTATATCGACGA
AGTCGACAAGATTTCCCGCAAGTCGGATAACCCGTCCATCACGCGTGACGTGTCGGGCGAGGGCGTTCAGCAGGCGCTTC
TGAAGATCATGGAAGGCACGGTCGCTTCCGTTCCGCCGCAGGGCGGCCGCAAGCATCCGCAGCAGGAATTCCTGCAGGTG
GATACGACTAACATTCTCTTCATCTGCGGCGGCGCGTTTGCCGGCCTGGACAAGATCATCTCGGCCAGGGGCGAAAAGAC
CTCGATTGGCTTCGGTGCGACCGTCAAGGCGGAAGACGATCGCCGCGTTGGCGAGGTGCTGCGCGAACTGGAGCCGGAAG
ATCTGGTGAAATTCGGTCTTATTCCGGAATTCATCGGCCGTCTGCCGGTTCTGGCTACGCTGGAGGACCTTGACGAGGAT
GCGCTGATCCAGATCCTGTCCGAGCCGAAGAACGCGCTGGTCAAGCAGTACCAGCGTCTGTTCGAGATGGAAGATGTGGA
ACTGACCTTCCACGAGGACGCGTTGCGCGAGATTGCCCGCCGGGCGATTACCCGCAAGACGGGTGCCCGCGGTCTGCGCT
CGATCATGGAAAAGATCCTTCTGGATACCATGTTCGAACTGCCGACGCTGGAAGGCGTGCGCGAAGTGGTGATCTCCAAC
GATGTCGTCAGCGGCATCGCTCGCCCGCTCTACATCTATGCGGATCGTCAGGAAGAAAAGGCCAATGTTTCGGCTTGA

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (16-53)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (317-389)

• AAA domain (Cdc48 subfamily) (AAA_2) (114-310)

3D structure

• AlphaFold DB: A0A1B9V328

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.657	93.882	0.588
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.335	94.824	0.525