Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FY146_RS05935 Genome accession   NZ_CP048508
Coordinates   1189348..1189932 (-) Length   194 a.a.
NCBI ID   WP_163117918.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain Sut002     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1184348..1194932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY146_RS05920 (FY146_05865) - 1187092..1187721 (+) 630 WP_003502754.1 MarC family protein -
  FY146_RS05925 (FY146_05870) - 1187848..1188996 (+) 1149 WP_099085417.1 HPP family protein -
  FY146_RS05930 (FY146_05875) - 1189051..1189314 (-) 264 WP_223564850.1 hypothetical protein -
  FY146_RS05935 (FY146_05880) ssb 1189348..1189932 (-) 585 WP_163117918.1 single-stranded DNA-binding protein Machinery gene
  FY146_RS05940 (FY146_05885) uvrA 1190197..1193118 (+) 2922 WP_099085416.1 excinuclease ABC subunit UvrA Machinery gene
  FY146_RS05945 (FY146_05890) - 1193175..1193975 (+) 801 WP_099085415.1 DUF72 domain-containing protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 20677.63 Da        Isoelectric Point: 4.7391

>NTDB_id=369092 FY146_RS05935 WP_163117918.1 1189348..1189932(-) (ssb) [Agrobacterium tumefaciens strain Sut002]
MQLPVMMAGGQDDEMAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERKEKTEWHTVVVFNEGLCK
VVEQYVKKGAKLYIEGQLQTRKWQDQTGNDRYSTEIVLQGFNSTLTMLDGRGEGGGAARSGGGDFGGGNDYGSGGGSSYG
GGYDQQPSSRGGSARGGSQPAGGFSNDMDDDIPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=369092 FY146_RS05935 WP_163117918.1 1189348..1189932(-) (ssb) [Agrobacterium tumefaciens strain Sut002]
ATGCAATTGCCGGTCATGATGGCCGGCGGACAGGATGACGAGATGGCTGGTAGCGTAAACAAGGTAATTCTGATCGGGAA
CGTGGGCGCTGATCCCGAAATCCGCCGGACGCAGGATGGCCGCCCCATCGCCAACCTGCGCATCGCCACCTCGGAGACCT
GGCGTGACCGCAATAGCGGCGAGCGCAAGGAAAAGACCGAATGGCACACCGTCGTGGTTTTCAACGAAGGCCTGTGCAAG
GTCGTCGAGCAATATGTCAAGAAGGGCGCCAAGCTCTATATCGAAGGCCAGCTGCAGACCCGCAAATGGCAGGACCAGAC
CGGTAACGACCGTTACTCCACCGAAATCGTGCTGCAGGGCTTCAACTCCACGCTGACCATGCTTGACGGTCGCGGCGAGG
GCGGCGGTGCTGCCCGCAGCGGCGGTGGCGATTTCGGCGGCGGCAACGATTATGGCAGCGGCGGCGGCTCCAGCTATGGC
GGCGGTTACGACCAGCAGCCCTCGTCGCGCGGCGGCTCTGCCCGTGGCGGCAGCCAGCCCGCCGGCGGCTTCTCCAATGA
CATGGACGACGACATCCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(19-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.178

100

0.459
  ssb Vibrio cholerae strain A1552

48.864

90.722

0.443
  ssb Neisseria gonorrhoeae MS11

39.106

92.268

0.361
  ssb Neisseria meningitidis MC58

39.106

92.268

0.361

Multiple sequence alignment