Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FH971_RS18980 Genome accession   NZ_CP041036
Coordinates   4361818..4363089 (+) Length   423 a.a.
NCBI ID   WP_140235342.1    Uniprot ID   -
Organism   Shewanella polaris strain SM1901     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4356818..4368089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FH971_RS18965 (FH971_18965) nadC 4357419..4358297 (+) 879 WP_140235339.1 carboxylating nicotinate-nucleotide diphosphorylase -
  FH971_RS18970 (FH971_18970) - 4359078..4359443 (+) 366 WP_140235340.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  FH971_RS18975 (FH971_18975) pilB 4360004..4361710 (+) 1707 WP_140235341.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FH971_RS18980 (FH971_18980) pilC 4361818..4363089 (+) 1272 WP_140235342.1 type II secretion system F family protein Machinery gene
  FH971_RS18985 (FH971_18985) pilD 4363132..4364058 (+) 927 WP_140235343.1 prepilin peptidase Machinery gene
  FH971_RS18990 (FH971_18990) coaE 4364055..4364684 (+) 630 WP_140235344.1 dephospho-CoA kinase -
  FH971_RS18995 (FH971_18995) zapD 4364677..4365411 (+) 735 WP_140235345.1 cell division protein ZapD -
  FH971_RS19000 (FH971_19000) yacG 4365454..4365666 (+) 213 WP_140235346.1 DNA gyrase inhibitor YacG -
  FH971_RS19005 (FH971_19005) mutT 4365677..4366075 (+) 399 WP_140235347.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46324.68 Da        Isoelectric Point: 10.3343

>NTDB_id=369092 FH971_RS18980 WP_140235342.1 4361818..4363089(+) (pilC) [Shewanella polaris strain SM1901]
MATTTAKRKPKAKVKKTTKHQPKVFTYQWKGINRDGQRTSGELKGSTIAEIRSVLKAQGVTPKGVRKKSAPLFKSEKKIT
AMDIAMITRQIATMLAAGVPLVTTIELLGRGHEKAKVRELLGTILSDVQSGIPLSDSLRPHRLYFDDLYVDLVAAGEHSG
SLDAVFDRVATYREKAEQLKSKIKKAMFYPAAVVIVAIAVTVLLLLFVVPQFEDIFKGFGAELPAFTQIVVGLSRGLQAS
WYYFAIAIVVSIWLFKRAHRTSQTFRNRIDEIILKIPILGEILHKAAMARFARTLSTTFAAGVPLIDGLESAAGASGNYV
YRKALLKVRQEVMSGMQMNVAMRTTGLFPDMLVQMVMIGEESGGLDDMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIG
TVVGGLIVAMYLPIFQMGNIVGG

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=369092 FH971_RS18980 WP_140235342.1 4361818..4363089(+) (pilC) [Shewanella polaris strain SM1901]
ATGGCCACAACAACAGCTAAAAGAAAACCGAAGGCAAAGGTAAAAAAAACAACTAAACACCAACCTAAGGTATTTACCTA
CCAATGGAAAGGCATTAACCGCGATGGTCAACGCACTTCGGGTGAATTGAAAGGATCAACTATAGCTGAAATTCGCAGCG
TGTTAAAAGCGCAAGGTGTTACACCAAAAGGCGTTCGCAAAAAATCCGCACCGCTATTTAAATCTGAAAAAAAGATCACC
GCAATGGACATTGCAATGATCACTCGCCAAATAGCAACCATGCTGGCTGCAGGTGTGCCATTAGTAACAACGATCGAATT
ACTTGGCCGCGGCCATGAAAAAGCCAAAGTAAGAGAACTATTAGGAACTATCCTGTCAGATGTTCAATCGGGTATACCAT
TATCTGATTCACTCAGACCACATAGATTATATTTCGACGATTTATATGTTGACTTAGTGGCTGCAGGTGAACATTCAGGT
TCCTTAGATGCGGTATTCGATCGAGTCGCTACCTACAGAGAAAAAGCTGAACAATTAAAATCCAAAATTAAAAAAGCGAT
GTTTTACCCAGCTGCCGTGGTCATAGTGGCTATTGCCGTTACCGTTCTGCTGTTACTGTTTGTAGTACCACAATTTGAAG
ATATTTTTAAAGGCTTTGGTGCAGAACTGCCTGCGTTTACCCAGATTGTTGTAGGTCTTTCTAGAGGGTTACAAGCCTCA
TGGTATTACTTTGCAATAGCTATCGTAGTTAGTATTTGGCTATTTAAAAGAGCCCATAGAACCTCTCAAACTTTTAGAAA
CAGAATTGACGAAATTATTTTAAAAATCCCTATCCTTGGCGAAATCCTCCATAAGGCCGCAATGGCTCGTTTTGCCCGCA
CTTTATCGACGACCTTCGCAGCAGGCGTACCCTTAATAGATGGTTTAGAATCAGCTGCTGGCGCATCAGGTAATTATGTT
TATCGCAAAGCATTATTGAAGGTCCGTCAGGAAGTGATGTCTGGCATGCAAATGAATGTCGCCATGCGCACCACGGGTTT
ATTCCCCGACATGCTGGTTCAAATGGTAATGATTGGTGAAGAGTCCGGTGGCTTAGATGATATGCTTAATAAAGTGGCAA
ACATTTATGAAATGCAAGTGGATGACGCAGTTGATGGTCTATCAAGCTTAATAGAACCTATTATGATGGTTGTTATTGGA
ACTGTTGTCGGCGGATTAATTGTCGCTATGTATTTACCCATTTTCCAGATGGGTAATATTGTTGGCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(88-210)

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.696

93.381

0.52
  pilC Legionella pneumophila strain ERS1305867

50.248

95.508

0.48
  pilC Acinetobacter baylyi ADP1

49.02

96.454

0.473
  pilC Acinetobacter baumannii D1279779

49.497

94.09

0.466
  pilC Vibrio cholerae strain A1552

47.99

94.09

0.452
  pilC Vibrio campbellii strain DS40M4

45.771

95.035

0.435
  pilG Neisseria meningitidis 44/76-A

43.081

90.544

0.39
  pilG Neisseria gonorrhoeae MS11

43.081

90.544

0.39

Multiple sequence alignment