Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   FY146_RS05940 Genome accession   NZ_CP048508
Coordinates   1190197..1193118 (+) Length   973 a.a.
NCBI ID   WP_099085416.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain Sut002     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1185197..1198118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY146_RS05920 (FY146_05865) - 1187092..1187721 (+) 630 WP_003502754.1 MarC family protein -
  FY146_RS05925 (FY146_05870) - 1187848..1188996 (+) 1149 WP_099085417.1 HPP family protein -
  FY146_RS05930 (FY146_05875) - 1189051..1189314 (-) 264 WP_223564850.1 hypothetical protein -
  FY146_RS05935 (FY146_05880) ssb 1189348..1189932 (-) 585 WP_163117918.1 single-stranded DNA-binding protein Machinery gene
  FY146_RS05940 (FY146_05885) uvrA 1190197..1193118 (+) 2922 WP_099085416.1 excinuclease ABC subunit UvrA Machinery gene
  FY146_RS05945 (FY146_05890) - 1193175..1193975 (+) 801 WP_099085415.1 DUF72 domain-containing protein -
  FY146_RS05950 (FY146_05895) dusA 1193982..1194992 (-) 1011 WP_099085414.1 tRNA dihydrouridine(20/20a) synthase DusA -
  FY146_RS05955 (FY146_05900) - 1195131..1195820 (+) 690 WP_077998382.1 fumarylacetoacetate hydrolase family protein -
  FY146_RS05960 (FY146_05905) - 1195856..1196389 (+) 534 WP_099085413.1 gamma carbonic anhydrase family protein -
  FY146_RS05965 (FY146_05910) zur 1196426..1196839 (-) 414 WP_003502775.1 zinc uptake transcriptional repressor Zur -
  FY146_RS05970 (FY146_05915) znuB 1196836..1197654 (-) 819 WP_099085412.1 zinc ABC transporter permease subunit ZnuB -

Sequence

Protein


Download         Length: 973 a.a.        Molecular weight: 107005.93 Da        Isoelectric Point: 6.5667

>NTDB_id=369093 FY146_RS05940 WP_099085416.1 1190197..1193118(+) (uvrA) [Agrobacterium tumefaciens strain Sut002]
MSELKTISIRGAREHNLKGIDLDLPRNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLEMMQKPDVDQID
GLSPAISIEQKTTSRNPRSTVGTVTEIYDYMRLLFARVGVPYSPATGLPIESQTVSQMVDRILAFEEGTRLYILAPIVRG
RKGEYKKELADLMKKGFQRVKVDGQFYEIADVPALDKKYKHDIDVVVDRAVVRPDMAARLADSLETCLKLADGLAIAEFA
DKPLPPEETAAGGSANKSLNETHERVLFSEKFACPVSGFTIPEIEPRLFSFNNPFGACPSCDGLGSQQKVDENLIVPEPA
RTLRDGAIAPWAKSSSPYYNQTLEALGKAFGFKLSSKWSDLSKDAQHAILQGTEEKIEFNYQDGARSYKTVKNFEGIVPN
LERRWKETDSAWAREEIERYMSAAPCPACAGYRLKPEALAVKINKLHIGEVTEMSIRTARDWFEVLPENLNAKQNEIAVR
ILKEIRERLRFLNDVGLDYLSLSRNSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNARLLDTLKHLRDIG
NTVIVVEHDEDAILTADYVVDIGPAAGIHGGQVIAEGSPQEVMANPKSLTGKYLSGELGVAVPAERRKPKKGREIKVFGA
RGNNLKNVTAAVPLGVFTAVTGVSGGGKSTFLIETLYKSAARRVMGAREIPAEHDRIDGFEFIDKVIDIDQSPIGRTPRS
NPATYTGAFTPIRDWFAGLPEAKARGYAPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCDVCHGKRYNRETLDVT
FKGKSIADVLDMTVEEGVEFFAAVPAVRDKLQSLFDVGLGYIKVGQQANTLSGGEAQRVKLAKELSKRSTGRTLYILDEP
TTGLHFHDVNKLLEMLHALVEQGNSVVVIEHNLEVIKTADWIIDIGPEGGTGGGEVVATGTPEDIVKVERSYTGHFLKEL
LERRPAGKREAAE

Nucleotide


Download         Length: 2922 bp        

>NTDB_id=369093 FY146_RS05940 WP_099085416.1 1190197..1193118(+) (uvrA) [Agrobacterium tumefaciens strain Sut002]
ATGAGTGAACTGAAGACGATTTCCATCCGTGGCGCCCGCGAGCATAACCTCAAGGGCATCGATCTGGATTTGCCGCGCAA
CAAGCTGATCGTCATGACCGGCCTTTCCGGCTCGGGCAAGTCTTCGCTTGCCTTCGATACGATCTATGCCGAAGGCCAGC
GCCGTTATGTCGAAAGCCTCTCGGCCTATGCGCGCCAGTTCCTGGAGATGATGCAGAAGCCGGATGTCGACCAGATCGAC
GGCCTGTCGCCGGCAATCTCCATCGAGCAGAAGACCACCTCGCGCAACCCGCGCTCCACGGTCGGCACGGTCACCGAGAT
CTACGATTATATGCGCCTTCTCTTCGCGCGTGTCGGTGTCCCCTATTCGCCAGCCACCGGCCTGCCGATCGAAAGCCAGA
CGGTCAGCCAGATGGTCGATCGCATTCTCGCTTTCGAGGAAGGTACGCGTCTCTATATTCTTGCGCCGATAGTGCGCGGC
CGCAAAGGCGAATATAAAAAGGAACTCGCCGATCTGATGAAGAAGGGCTTCCAGCGCGTCAAGGTGGATGGCCAGTTCTA
CGAAATCGCCGACGTGCCCGCCCTGGATAAGAAATACAAGCACGACATCGACGTGGTGGTCGACCGCGCCGTCGTGCGCC
CGGATATGGCAGCACGTCTTGCCGACAGTCTCGAGACCTGCCTCAAGCTCGCCGACGGGCTGGCGATTGCGGAATTTGCC
GACAAGCCTTTGCCACCGGAAGAAACCGCCGCCGGCGGCTCCGCCAACAAGTCGCTCAACGAGACCCATGAGCGGGTGCT
GTTTTCGGAAAAATTCGCCTGCCCCGTTTCCGGCTTCACCATTCCGGAAATCGAGCCGCGGCTTTTCTCCTTCAACAACC
CCTTCGGCGCCTGCCCGAGCTGTGACGGTCTCGGCTCGCAGCAGAAGGTGGATGAAAACCTCATCGTGCCGGAGCCCGCC
CGCACGCTGCGCGACGGCGCGATTGCGCCCTGGGCCAAATCCTCCTCGCCCTATTATAACCAGACGCTGGAAGCGCTCGG
CAAGGCCTTCGGCTTCAAGCTCTCCAGCAAATGGTCCGATCTTTCGAAGGACGCACAGCACGCCATCCTGCAGGGCACCG
AGGAAAAGATCGAATTCAACTATCAGGACGGCGCCCGCTCCTACAAGACGGTGAAGAATTTCGAAGGCATCGTGCCCAAT
CTGGAACGTCGCTGGAAAGAGACGGACAGCGCCTGGGCGCGCGAGGAAATCGAACGTTACATGTCGGCAGCCCCCTGCCC
GGCCTGCGCCGGTTATCGCCTGAAGCCGGAAGCGCTCGCCGTCAAGATCAACAAGCTTCACATCGGTGAAGTCACCGAAA
TGTCGATCCGCACGGCGCGCGACTGGTTTGAAGTGCTGCCGGAAAACCTCAACGCCAAGCAGAACGAAATCGCAGTCCGC
ATCCTCAAGGAAATCCGCGAGCGCCTGCGCTTCCTCAATGATGTCGGACTGGATTATCTCAGCCTGTCGCGCAATTCCGG
CACGCTTTCCGGCGGTGAAAGCCAGCGTATCCGTCTGGCCTCGCAGATCGGCTCGGGCCTGACAGGCGTTCTCTATGTTC
TCGACGAGCCGTCAATCGGCCTGCACCAGCGCGACAACGCCCGCCTGCTCGATACGCTGAAACATCTGCGCGATATCGGC
AATACTGTCATCGTGGTCGAACATGACGAAGACGCCATTCTGACGGCCGATTATGTCGTCGATATCGGCCCGGCCGCCGG
CATTCATGGCGGTCAGGTGATTGCCGAAGGATCACCGCAGGAGGTGATGGCCAATCCGAAATCGCTGACCGGCAAATATC
TTTCGGGCGAACTCGGCGTCGCCGTGCCGGCTGAGCGTCGCAAGCCCAAGAAGGGCCGCGAAATCAAGGTGTTTGGCGCG
CGCGGCAACAACCTGAAGAATGTCACGGCAGCTGTGCCGCTCGGTGTTTTCACTGCCGTAACCGGCGTTTCGGGCGGCGG
CAAATCCACATTCCTGATCGAGACGCTTTATAAATCGGCGGCGCGCCGGGTGATGGGTGCGCGCGAAATCCCGGCCGAGC
ACGACCGCATCGATGGTTTCGAATTCATCGACAAGGTGATCGATATCGACCAGTCGCCGATTGGCCGCACGCCGCGTTCC
AACCCGGCCACCTATACCGGTGCGTTCACGCCGATCCGCGACTGGTTCGCCGGTCTGCCGGAAGCCAAGGCGCGCGGTTA
CGCGCCGGGCCGTTTCTCCTTCAACGTCAAGGGCGGCCGCTGCGAGGCCTGCCAGGGCGATGGCGTCATCAAGATCGAGA
TGCACTTCCTGCCTGACGTTTACGTCACCTGCGATGTCTGCCACGGCAAGCGTTATAATCGCGAGACGCTTGACGTCACC
TTCAAGGGCAAATCCATCGCCGACGTGCTGGATATGACGGTGGAGGAAGGCGTGGAATTCTTCGCCGCCGTGCCGGCTGT
GCGCGACAAGCTGCAATCGCTTTTCGATGTCGGCCTCGGTTATATCAAGGTCGGCCAGCAGGCCAATACGCTCTCCGGCG
GCGAAGCGCAGCGCGTCAAGCTCGCCAAGGAACTGTCCAAGCGCTCCACCGGTCGCACGCTCTACATTCTCGACGAGCCG
ACGACCGGCCTGCATTTCCACGATGTCAACAAGCTGCTCGAAATGCTGCATGCGCTTGTGGAACAGGGTAATTCCGTCGT
GGTGATCGAGCACAATCTCGAAGTCATCAAGACGGCGGACTGGATCATCGATATCGGGCCTGAAGGCGGCACGGGCGGCG
GCGAAGTGGTGGCGACCGGTACGCCGGAAGACATCGTGAAAGTCGAGCGTTCCTATACCGGTCACTTCCTGAAGGAGCTT
CTGGAGCGCCGGCCGGCCGGAAAACGGGAGGCTGCGGAGTAA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(311-419)

UvrA interaction domain (UvrA_inter)

(133-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.247

98.561

0.564
  uvrA Streptococcus pneumoniae TIGR4

57.247

98.561

0.564
  uvrA Streptococcus pneumoniae D39

57.247

98.561

0.564

Multiple sequence alignment