Detailed information NTG0369012

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: FY148_RS04515
• Genome accession: NZ_CP048497
• Coordinates: 912005..912637 (+)
• Length: 210 a.a.
• NCBI ID: WP_003502355.1
• Uniprot ID: -
• Organism: Agrobacterium tumefaciens strain Teh002
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 907005..917637

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FY148_RS04490 (FY148_04480)	-	907421..907762 (+)	342	WP_003502345.1	cupin domain-containing protein	-
FY148_RS04495 (FY148_04485)	-	907783..908097 (-)	315	WP_060724092.1	ArsR/SmtB family transcription factor	-
FY148_RS04500 (FY148_04490)	-	908187..908957 (+)	771	WP_162686135.1	SDR family NAD(P)-dependent oxidoreductase	-
FY148_RS04505 (FY148_04495)	-	908978..910231 (-)	1254	WP_162686134.1	cytochrome P450	-
FY148_RS04510 (FY148_04500)	-	910304..911551 (-)	1248	WP_087743807.1	sensor domain-containing diguanylate cyclase	-
FY148_RS04515 (FY148_04505)	clpP	912005..912637 (+)	633	WP_003502355.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
FY148_RS04520 (FY148_04510)	clpX	912931..914208 (+)	1278	WP_003496489.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
FY148_RS04525 (FY148_04515)	lon	914623..917040 (+)	2418	WP_003502358.1	endopeptidase La	-
FY148_RS04530 (FY148_04520)	hupB	917330..917605 (+)	276	WP_003502360.1	DNA-binding protein HupB	-

Sequence

Protein

• Length: 210 a.a.
• Molecular weight: 23268.82 Da
• Isoelectric Point: 6.1215

>NTDB_id=369012 FY148_RS04515 WP_003502355.1 912005..912637(+) (clpP) [Agrobacterium tumefaciens strain Teh002]
MKNPVDTAMALVPMVVEQTNRGERSYDIFSRLLKERIIFLTGPVEDQMASLVCAQLLFLEAENPKKEIALYINSPGGVVT
AGMAIYDTMQFIRPAVSTLCVGQAASMGSLLLAAGEKGMRFATPNARIMVHQPSGGFQGQASDIERHARDIIKMKRRLNE
VYVKHTGRTLEEVEKTLDRDHFMDADEAKEWGVIDKILTSRQEIEGAAAN

Nucleotide

• Length: 633 bp

>NTDB_id=369012 FY148_RS04515 WP_003502355.1 912005..912637(+) (clpP) [Agrobacterium tumefaciens strain Teh002]
ATGAAAAATCCAGTTGATACCGCCATGGCTCTGGTGCCGATGGTCGTAGAGCAGACCAATCGCGGCGAACGCTCCTACGA
CATATTTTCCCGTCTTCTCAAGGAACGCATCATTTTCCTTACCGGCCCGGTGGAAGACCAGATGGCGTCGCTCGTCTGCG
CGCAGCTTCTTTTCCTCGAGGCTGAAAACCCGAAGAAGGAAATCGCGCTCTACATCAATTCGCCGGGTGGCGTCGTGACC
GCCGGCATGGCGATCTACGATACGATGCAGTTCATCCGCCCTGCGGTTTCCACGCTCTGCGTCGGTCAGGCCGCGTCCAT
GGGCTCGCTGCTTCTGGCTGCCGGTGAAAAGGGAATGCGTTTCGCCACCCCGAACGCCCGCATCATGGTTCACCAGCCGT
CCGGCGGTTTCCAGGGCCAGGCATCGGATATCGAGCGCCACGCCCGTGACATCATCAAGATGAAGCGTCGCCTGAATGAA
GTCTACGTGAAGCATACTGGCCGCACGCTCGAAGAGGTTGAAAAAACCCTTGATCGCGACCATTTCATGGATGCAGACGA
GGCGAAGGAATGGGGCGTGATCGACAAGATCCTGACCTCGCGCCAGGAAATCGAAGGCGCCGCCGCGAATTGA

Domains

Predicted by InterProScan.

• Clp protease (CLP_protease) (21-200)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	60.513	92.857	0.562
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	57.447	89.524	0.514
clpP	Lactococcus lactis subsp. cremoris KW2	52.632	90.476	0.476
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	51.053	90.476	0.462
clpP	Streptococcus mutans UA159	49.231	92.857	0.457
clpP	Streptococcus pneumoniae TIGR4	49.223	91.905	0.452
clpP	Streptococcus pneumoniae Rx1	49.223	91.905	0.452
clpP	Streptococcus pneumoniae D39	49.223	91.905	0.452
clpP	Streptococcus pneumoniae R6	49.223	91.905	0.452
clpP	Streptococcus pyogenes JRS4	48.969	92.381	0.452
clpP	Streptococcus pyogenes MGAS315	48.969	92.381	0.452
clpP	Streptococcus thermophilus LMG 18311	48.969	92.381	0.452
clpP	Streptococcus thermophilus LMD-9	48.969	92.381	0.452