Detailed information NTG0369013

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: FY148_RS04520
• Genome accession: NZ_CP048497
• Coordinates: 912931..914208 (+)
• Length: 425 a.a.
• NCBI ID: WP_003496489.1
• Uniprot ID: A0A822V6D6
• Organism: Agrobacterium tumefaciens strain Teh002
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 907931..919208

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FY148_RS04500 (FY148_04490)	-	908187..908957 (+)	771	WP_162686135.1	SDR family NAD(P)-dependent oxidoreductase	-
FY148_RS04505 (FY148_04495)	-	908978..910231 (-)	1254	WP_162686134.1	cytochrome P450	-
FY148_RS04510 (FY148_04500)	-	910304..911551 (-)	1248	WP_087743807.1	sensor domain-containing diguanylate cyclase	-
FY148_RS04515 (FY148_04505)	clpP	912005..912637 (+)	633	WP_003502355.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
FY148_RS04520 (FY148_04510)	clpX	912931..914208 (+)	1278	WP_003496489.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
FY148_RS04525 (FY148_04515)	lon	914623..917040 (+)	2418	WP_003502358.1	endopeptidase La	-
FY148_RS04530 (FY148_04520)	hupB	917330..917605 (+)	276	WP_003502360.1	DNA-binding protein HupB	-

Sequence

Protein

• Length: 425 a.a.
• Molecular weight: 46913.82 Da
• Isoelectric Point: 5.0788

>NTDB_id=369013 FY148_RS04520 WP_003496489.1 912931..914208(+) (clpX) [Agrobacterium tumefaciens strain Teh002]
MSKVSGSNGGDSKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKTSMVKSREGVPTPQDIIKILDEYV
IGQKQAKKILSVAVHNHYKRLAHASKNGDVELAKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDV
ENIILKLLQSADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV
DTTNILFICGGAFAGLDKIISARGEKTSIGFGATVKAEDDRRVGEVLRELEPEDLVKFGLIPEFIGRLPVLATLEDLDED
ALIQILSEPKNALVKQYQRLFEMEDVELTFHEDALREIARKAITRKTGARGLRSIMEKILLDTMFELPTLEGVREVVISN
DVVSGVARPLYIYADRQEEKTNVSA

Nucleotide

• Length: 1278 bp

>NTDB_id=369013 FY148_RS04520 WP_003496489.1 912931..914208(+) (clpX) [Agrobacterium tumefaciens strain Teh002]
ATGAGCAAAGTCAGCGGCAGCAACGGCGGCGACTCTAAGAATACACTCTATTGTTCATTCTGCGGCAAGAGCCAGCACGA
AGTCCGGAAACTCATTGCCGGACCGACGGTATTCATCTGCGATGAATGCGTCGAATTGTGCATGGACATCATCCGCGAGG
AGAACAAGACGTCGATGGTGAAGTCGCGCGAGGGTGTTCCCACCCCGCAGGACATCATCAAGATCCTCGACGAGTATGTC
ATCGGCCAGAAGCAGGCGAAGAAAATCCTGTCGGTGGCCGTTCACAACCACTACAAGCGCCTCGCGCACGCCTCCAAGAA
CGGCGATGTCGAGCTTGCGAAGTCGAACATCATGCTCGTCGGTCCGACGGGTTGCGGCAAGACCTATCTTGCCCAGACGC
TCGCCCGCATCATCGACGTTCCCTTCACCATGGCGGACGCAACGACGCTGACCGAAGCCGGTTATGTCGGCGAGGACGTG
GAAAACATCATCCTGAAGCTGTTGCAGTCTGCGGATTACAATGTCGAACGCGCCCAGCGCGGCATCGTCTATATCGACGA
AGTCGACAAGATTTCCCGCAAGTCGGACAACCCGTCCATCACGCGCGACGTGTCGGGCGAGGGCGTTCAGCAGGCGCTTC
TGAAGATCATGGAAGGCACGGTCGCTTCCGTTCCGCCGCAGGGCGGCCGCAAGCATCCGCAGCAGGAATTCCTGCAGGTG
GATACGACCAACATCCTGTTCATCTGCGGCGGCGCGTTTGCCGGCCTCGACAAGATCATCTCGGCCCGTGGTGAAAAGAC
CTCGATCGGCTTTGGTGCGACCGTCAAGGCGGAAGACGATCGCCGCGTTGGCGAGGTTCTGCGCGAACTGGAGCCCGAAG
ACCTGGTGAAGTTCGGTCTCATCCCGGAATTCATCGGCCGTCTGCCGGTTCTGGCGACGCTGGAGGACCTCGACGAGGAT
GCACTGATCCAGATCCTGTCCGAGCCGAAGAACGCGCTGGTCAAGCAGTATCAGCGCCTGTTCGAGATGGAAGATGTGGA
ACTGACCTTCCACGAGGACGCTCTGCGCGAAATCGCCCGCAAGGCGATCACCCGCAAGACCGGCGCCCGCGGCCTGCGCT
CGATCATGGAGAAGATCCTGCTGGATACCATGTTCGAACTGCCGACGCTGGAAGGCGTACGCGAAGTGGTCATTTCCAAC
GACGTCGTCAGCGGCGTCGCCCGTCCGCTCTACATCTATGCGGATCGTCAGGAAGAAAAGACCAACGTTTCGGCCTGA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (317-389)

• AAA domain (Cdc48 subfamily) (AAA_2) (114-310)

• ClpX C4-type zinc finger (zf-C4_ClpX) (16-53)

3D structure

• AlphaFold DB: A0A822V6D6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.657	93.882	0.588
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.087	94.824	0.522