Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   SVI_RS01230 Genome accession   NC_014012
Coordinates   301388..302659 (-) Length   423 a.a.
NCBI ID   WP_013049542.1    Uniprot ID   D4ZEJ7
Organism   Shewanella violacea DSS12     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 296388..307659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SVI_RS01200 (SVI_0250) - 297660..298229 (+) 570 WP_013049536.1 membrane integrity-associated transporter subunit PqiC -
  SVI_RS01205 (SVI_0251) mutT 298297..298713 (-) 417 WP_013049537.1 8-oxo-dGTP diphosphatase MutT -
  SVI_RS01210 (SVI_0252) yacG 298719..298931 (-) 213 WP_013049538.1 DNA gyrase inhibitor YacG -
  SVI_RS01215 (SVI_0253) zapD 299029..299763 (-) 735 WP_013049539.1 cell division protein ZapD -
  SVI_RS01220 (SVI_0254) coaE 299772..300377 (-) 606 WP_013049540.1 dephospho-CoA kinase -
  SVI_RS01225 (SVI_0255) pilD 300410..301327 (-) 918 WP_013049541.1 A24 family peptidase Machinery gene
  SVI_RS01230 (SVI_0256) pilC 301388..302659 (-) 1272 WP_013049542.1 type II secretion system F family protein Machinery gene
  SVI_RS01235 (SVI_0257) pilB 302689..304398 (-) 1710 WP_013049543.1 type IV-A pilus assembly ATPase PilB Machinery gene
  SVI_RS01240 (SVI_0258) - 304497..304943 (-) 447 WP_013049544.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  SVI_RS01245 (SVI_0259) nadC 305970..306887 (-) 918 WP_013049545.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 45834.92 Da        Isoelectric Point: 10.1180

>NTDB_id=36850 SVI_RS01230 WP_013049542.1 301388..302659(-) (pilC) [Shewanella violacea DSS12]
MATASTIKKRQARAKKSNVNSQPKIYTYEWKGVNKAGQKTSGELKGATAAEVRSQLKTQGVNPKSVKKQSASLFQLGAPK
INAMDIAMITRQIATMLSAGVPLVTTIEMLGRGHEKVKMRELLGTILNDVQAGIPLSDALRPHRQYFDDLYVDLVAAGEH
SGSLDAVFDRVATYREKTEALKSKIKKAMFYPAAVVVVAFGVTALLLLFVVPQFEEIFSGFGAELPAFTQLVIGISDALQ
ASWYIFAVIIIVAVFLFKRAHRSSQKFRDQVDASLLRIPAIGPILHKAAMSRFARTLATTFAAGVPLIDGLESAAGASGN
AVYRKAVLKVRSEVMAGMQMNVAMRTTNLFPDMLIQMVMIGEESGGLDGMLNKVANIYEMQVDDAVDGLSSLIEPIMMVV
IGTLVGGLIVAMYLPIFEMGKII

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=36850 SVI_RS01230 WP_013049542.1 301388..302659(-) (pilC) [Shewanella violacea DSS12]
ATGGCGACAGCAAGCACGATAAAAAAAAGACAGGCGCGAGCTAAGAAATCCAATGTTAATAGCCAGCCTAAGATCTATAC
CTATGAATGGAAAGGTGTCAACAAAGCCGGTCAAAAGACCTCCGGAGAACTTAAAGGCGCCACGGCCGCAGAAGTCCGTA
GTCAGCTAAAAACTCAGGGGGTTAACCCTAAGTCGGTCAAAAAGCAATCCGCCAGTCTTTTCCAATTGGGGGCACCCAAG
ATAAATGCCATGGATATCGCCATGATCACCCGTCAGATAGCAACTATGCTCTCAGCCGGTGTCCCCTTGGTAACCACTAT
CGAGATGTTAGGCCGAGGTCATGAGAAGGTCAAGATGCGAGAGCTATTAGGCACTATCTTAAACGATGTCCAAGCCGGTA
TTCCGCTATCTGATGCATTAAGGCCCCACAGACAATATTTCGATGACTTGTACGTGGATCTGGTGGCCGCCGGTGAGCAC
TCAGGTTCACTAGATGCCGTGTTCGATCGTGTCGCAACCTACAGGGAGAAAACCGAAGCCTTAAAATCTAAAATTAAGAA
GGCCATGTTTTACCCAGCTGCGGTTGTCGTTGTAGCCTTCGGGGTAACAGCCTTACTGTTACTCTTCGTCGTCCCACAGT
TTGAGGAAATATTTTCCGGTTTCGGCGCCGAACTGCCAGCCTTTACCCAGTTAGTCATAGGTATTTCTGATGCACTGCAA
GCCTCCTGGTATATATTTGCCGTGATAATCATAGTTGCCGTTTTTTTATTTAAACGCGCACACAGAAGTTCCCAGAAGTT
TAGAGATCAAGTCGATGCGTCACTACTTAGAATACCGGCTATCGGCCCCATACTGCATAAAGCCGCCATGTCTCGTTTCG
CACGCACTTTAGCGACAACCTTCGCCGCAGGTGTCCCCCTTATAGATGGTCTGGAATCTGCCGCCGGCGCCTCGGGAAAT
GCAGTTTATCGCAAAGCGGTACTAAAGGTCCGTTCCGAAGTGATGGCGGGGATGCAGATGAATGTCGCCATGCGCACCAC
CAACCTATTTCCCGATATGCTGATCCAGATGGTGATGATAGGTGAAGAGTCTGGTGGACTCGATGGAATGCTCAATAAGG
TCGCTAACATTTATGAGATGCAGGTGGATGACGCCGTAGATGGACTTTCTAGCCTGATTGAACCTATCATGATGGTAGTG
ATCGGTACCTTAGTCGGTGGTTTAATCGTTGCCATGTATCTTCCCATCTTCGAAATGGGTAAGATTATTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(293-415)

Type II secretion system (T2SS), protein F (T2SSF)

(90-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D4ZEJ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.808

93.617

0.522
  pilC Acinetobacter baylyi ADP1

50.122

97.163

0.487
  pilC Legionella pneumophila strain ERS1305867

50

94.563

0.473
  pilC Acinetobacter baumannii D1279779

48.995

94.09

0.461
  pilC Vibrio cholerae strain A1552

47.607

93.853

0.447
  pilC Vibrio campbellii strain DS40M4

46.269

95.035

0.44
  pilG Neisseria meningitidis 44/76-A

42.025

93.381

0.392
  pilG Neisseria gonorrhoeae MS11

42.025

93.381

0.392

Multiple sequence alignment