Detailed information NTG0036849

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: SVI_RS01225
• Genome accession: NC_014012
• Coordinates: 300410..301327 (-)
• Length: 305 a.a.
• NCBI ID: WP_013049541.1
• Uniprot ID: D4ZEJ6
• Organism: Shewanella violacea DSS12
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 295410..306327

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SVI_RS01195 (SVI_0249)	pqiB	296017..297663 (+)	1647	WP_041420162.1	intermembrane transport protein PqiB	-
SVI_RS01200 (SVI_0250)	-	297660..298229 (+)	570	WP_013049536.1	membrane integrity-associated transporter subunit PqiC	-
SVI_RS01205 (SVI_0251)	mutT	298297..298713 (-)	417	WP_013049537.1	8-oxo-dGTP diphosphatase MutT	-
SVI_RS01210 (SVI_0252)	yacG	298719..298931 (-)	213	WP_013049538.1	DNA gyrase inhibitor YacG	-
SVI_RS01215 (SVI_0253)	zapD	299029..299763 (-)	735	WP_013049539.1	cell division protein ZapD	-
SVI_RS01220 (SVI_0254)	coaE	299772..300377 (-)	606	WP_013049540.1	dephospho-CoA kinase	-
SVI_RS01225 (SVI_0255)	pilD	300410..301327 (-)	918	WP_013049541.1	A24 family peptidase	Machinery gene
SVI_RS01230 (SVI_0256)	pilC	301388..302659 (-)	1272	WP_013049542.1	type II secretion system F family protein	Machinery gene
SVI_RS01235 (SVI_0257)	pilB	302689..304398 (-)	1710	WP_013049543.1	type IV-A pilus assembly ATPase PilB	Machinery gene
SVI_RS01240 (SVI_0258)	-	304497..304943 (-)	447	WP_013049544.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-

Sequence

Protein

• Length: 305 a.a.
• Molecular weight: 33902.09 Da
• Isoelectric Point: 5.9892

>NTDB_id=36849 SVI_RS01225 WP_013049541.1 300410..301327(-) (pilD) [Shewanella violacea DSS12]
MTELITILSHNLWLFSAIAFIFAAVIGSFLNVVIHRFPVMMKREWQQECNQYLNEYHKELIDPISNELERAIDGYPEKYN
LIVPGSACPKCKTDIKPWHNLPVIGWLMLQGKCASCSSPISARYPIIELLTGLAVAFLALHFGPTLEFAFATVLTFVLIA
LTGIDLDEMLLPDQLTLPLLWLGLIINLDSTFASPSDALIGAAAGYLSLWSVFWAFKLLTGKDGMGYGDFKLLAVFGAWF
GWQLLPQIILLSSIVGAVVGIMLIISKRLNKGNPIPFGPYIALAGWIAMIWGNNINTWYLSTLYS

Nucleotide

• Length: 918 bp

>NTDB_id=36849 SVI_RS01225 WP_013049541.1 300410..301327(-) (pilD) [Shewanella violacea DSS12]
ATGACAGAATTAATCACTATATTAAGCCACAACTTGTGGCTCTTTAGCGCTATAGCCTTTATCTTTGCCGCCGTTATTGG
TAGCTTTCTCAATGTGGTCATTCATCGCTTTCCCGTGATGATGAAACGAGAATGGCAGCAAGAATGTAATCAATATCTCA
ATGAGTATCATAAAGAGCTTATCGATCCCATCTCAAATGAGCTAGAGCGTGCTATCGATGGCTATCCAGAGAAATATAAT
CTAATTGTACCAGGTTCGGCCTGCCCCAAATGCAAGACAGATATCAAGCCTTGGCATAATTTGCCTGTTATTGGCTGGCT
AATGCTGCAAGGAAAGTGCGCCTCATGTAGTTCACCTATTTCTGCACGTTACCCCATCATAGAATTGCTAACTGGATTAG
CCGTGGCTTTTCTTGCACTGCACTTCGGTCCAACTTTGGAGTTTGCCTTCGCTACTGTGCTCACTTTCGTACTGATAGCG
CTAACAGGTATAGATCTCGACGAGATGTTATTGCCGGACCAACTGACACTCCCTCTGCTATGGCTTGGCTTGATCATTAA
TCTAGACAGCACCTTTGCCAGCCCAAGCGATGCATTAATTGGCGCAGCAGCTGGCTATTTGAGCCTCTGGAGTGTCTTCT
GGGCGTTTAAACTGTTAACAGGTAAGGATGGTATGGGCTATGGTGATTTTAAGCTTTTAGCCGTTTTTGGTGCCTGGTTT
GGATGGCAATTACTGCCGCAGATAATCCTGCTGTCATCGATAGTCGGCGCGGTCGTTGGTATCATGCTGATCATCAGTAA
AAGGCTCAATAAAGGTAATCCAATTCCTTTTGGTCCCTATATAGCATTAGCGGGCTGGATAGCCATGATCTGGGGTAATA
ATATCAATACTTGGTATCTATCCACCTTATATAGCTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (153-261)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-142)

3D structure

• AlphaFold DB: D4ZEJ6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	50	99.672	0.498
pilD	Vibrio cholerae strain A1552	51.536	96.066	0.495
pilD	Acinetobacter baumannii D1279779	49.338	99.016	0.489
pilD	Acinetobacter nosocomialis M2	49.338	99.016	0.489
pilD	Neisseria gonorrhoeae MS11	44.84	92.131	0.413