Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   FHI56_RS01530 Genome accession   NZ_CP040804
Coordinates   103983..105251 (-) Length   422 a.a.
NCBI ID   WP_002886326.1    Uniprot ID   A0AB35IYG6
Organism   Streptococcus salivarius strain LAB813     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 98983..110251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHI56_RS01520 (FHI56_01520) spx 102243..102641 (-) 399 WP_002886328.1 transcriptional regulator Spx -
  FHI56_RS01525 (FHI56_01525) recA 102808..103947 (-) 1140 WP_002886327.1 recombinase RecA Machinery gene
  FHI56_RS01530 (FHI56_01530) cinA 103983..105251 (-) 1269 WP_002886326.1 competence/damage-inducible protein A Machinery gene
  FHI56_RS01535 (FHI56_01535) - 105348..105902 (-) 555 WP_002886325.1 DNA-3-methyladenine glycosylase I -
  FHI56_RS01540 (FHI56_01540) ruvA 105911..106501 (-) 591 WP_002886323.1 Holliday junction branch migration protein RuvA -
  FHI56_RS01545 (FHI56_01545) - 106659..106880 (-) 222 WP_002886321.1 hypothetical protein -
  FHI56_RS01550 (FHI56_01550) mutL 107011..108948 (-) 1938 WP_118058338.1 DNA mismatch repair endonuclease MutL -
  FHI56_RS01555 (FHI56_01555) - 108998..109303 (-) 306 WP_064524956.1 hypothetical protein -
  FHI56_RS01560 (FHI56_01560) - 109482..109919 (+) 438 WP_002886318.1 LytTR family DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45683.85 Da        Isoelectric Point: 5.1868

>NTDB_id=367322 FHI56_RS01530 WP_002886326.1 103983..105251(-) (cinA) [Streptococcus salivarius strain LAB813]
MKAELIAVGTEILTGQITNTNAQFLSEKLAELGIDVYFHTAVGDNESRLLSVLDQASQRSDLVILCGGLGPTEDDLTKQT
LAKFLGKELVFDEEASKKLDSFFATRPKHTRTPNNERQAQIVEGAIPLQNPTGLAVGGIITAQGVTYVVLPGPPSELKPM
VNQELIPALTENHSSLYSRVLRFFGVGESQLVTVLKDFIVNQTDPTIAPYAKVGEVTLRLSTKASSQEEADQKLDVLEKQ
IRSTKTLDGKSLSDFIYGYGESNSLAFEAFRLLKHHGKTITAAESLTAGLFQASIADFSGASQVFKGGFVTYSIEEKAKM
LDIPLSQLEEHGVVSHFTAEKMAEGARAKTDSDYGVALTGVAGPDSLEGHPAGTVFIGIADRNQVRSIKVVIGGRSRSDV
RYISTLYAFNLVRQALLQEDMI

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=367322 FHI56_RS01530 WP_002886326.1 103983..105251(-) (cinA) [Streptococcus salivarius strain LAB813]
ATGAAAGCTGAATTGATTGCAGTAGGAACTGAAATCCTAACCGGGCAGATCACCAATACCAATGCCCAATTTTTATCTGA
GAAACTAGCTGAACTAGGAATTGACGTGTATTTTCACACAGCAGTAGGAGACAATGAAAGCCGCCTACTTTCAGTTCTTG
ATCAAGCCAGTCAGCGTAGTGATTTAGTCATACTTTGTGGTGGACTTGGCCCTACTGAGGACGACCTAACCAAGCAAACC
CTGGCTAAATTTTTAGGAAAAGAACTCGTTTTTGATGAGGAGGCTAGTAAAAAACTGGATAGTTTCTTTGCTACTCGTCC
TAAACACACACGAACGCCTAATAATGAACGTCAAGCACAAATTGTTGAGGGGGCTATTCCCTTGCAAAACCCGACAGGTC
TTGCAGTTGGAGGGATTATTACTGCTCAAGGGGTGACCTATGTAGTCTTACCTGGTCCACCAAGTGAACTCAAACCTATG
GTGAATCAAGAACTTATTCCAGCTCTTACTGAGAATCACTCAAGTCTTTATTCGAGAGTCCTAAGATTCTTCGGCGTTGG
AGAAAGTCAATTAGTGACTGTTCTTAAGGATTTTATTGTTAACCAAACAGATCCAACCATAGCTCCATACGCTAAAGTGG
GGGAAGTAACACTTCGCTTGTCAACGAAGGCTTCTTCGCAAGAAGAAGCAGATCAAAAACTAGATGTTTTAGAAAAACAA
ATTCGTTCGACTAAAACTCTAGATGGCAAATCCTTATCTGATTTCATTTATGGATATGGAGAGTCTAATAGTTTAGCCTT
TGAAGCTTTTCGTTTGCTTAAGCACCATGGCAAGACCATCACTGCAGCTGAAAGCCTAACAGCAGGTTTATTTCAGGCTA
GTATTGCTGATTTTTCAGGGGCCTCACAAGTATTTAAAGGTGGATTTGTTACTTATAGCATTGAAGAAAAAGCTAAAATG
TTGGATATTCCCTTGTCGCAACTAGAAGAACATGGTGTTGTCAGTCATTTTACTGCAGAAAAAATGGCTGAAGGTGCTCG
AGCTAAAACAGATAGCGATTATGGAGTTGCACTTACCGGTGTAGCTGGACCAGATTCATTAGAAGGACACCCAGCAGGTA
CGGTATTTATTGGTATTGCTGATAGGAATCAAGTAAGGTCAATCAAGGTTGTTATAGGTGGAAGAAGTCGTTCTGATGTT
AGATATATTAGTACCCTCTATGCCTTTAACCTAGTTCGCCAAGCTTTATTACAAGAAGACATGATTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(264-415)

Damage-inducible protein CinA KH domain (CinA_KH)

(178-243)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

75.179

99.289

0.746
  cinA Streptococcus mitis NCTC 12261

74.702

99.289

0.742
  cinA Streptococcus pneumoniae TIGR4

73.747

99.289

0.732
  cinA Streptococcus pneumoniae Rx1

73.508

99.289

0.73
  cinA Streptococcus pneumoniae R6

73.508

99.289

0.73
  cinA Streptococcus pneumoniae D39

73.27

99.289

0.727
  cinA Streptococcus mutans UA159

71.703

98.815

0.709
  cinA Streptococcus suis isolate S10

55.529

98.578

0.547
  cinA Bacillus subtilis subsp. subtilis str. 168

44.893

99.763

0.448

Multiple sequence alignment