Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   FGE23_RS12020 Genome accession   NZ_CP040672
Coordinates   2326224..2326688 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus amyloliquefaciens strain X030     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2321224..2331688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGE23_RS12000 - 2321704..2323524 (+) 1821 WP_113971599.1 PAS domain-containing protein -
  FGE23_RS12005 - 2323500..2324719 (-) 1220 Protein_2299 aminotransferase A -
  FGE23_RS19840 - 2324920..2325081 (-) 162 WP_003154625.1 hypothetical protein -
  FGE23_RS12015 cheV 2325270..2326181 (+) 912 WP_003154623.1 chemotaxis protein CheV -
  FGE23_RS12020 kre 2326224..2326688 (-) 465 WP_003154622.1 YkyB family protein Regulator
  FGE23_RS12025 - 2326811..2328103 (-) 1293 WP_003154621.1 MFS transporter -
  FGE23_RS12030 - 2328179..2328673 (-) 495 WP_088037173.1 L,D-transpeptidase family protein -
  FGE23_RS12035 - 2328748..2329611 (-) 864 WP_146276666.1 metallophosphoesterase -
  FGE23_RS12040 fadH 2329753..2330517 (+) 765 WP_076851224.1 2,4-dienoyl-CoA reductase -
  FGE23_RS20060 - 2330628..2331176 (+) 549 Protein_2307 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=366372 FGE23_RS12020 WP_003154622.1 2326224..2326688(-) (kre) [Bacillus amyloliquefaciens strain X030]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=366372 FGE23_RS12020 WP_003154622.1 2326224..2326688(-) (kre) [Bacillus amyloliquefaciens strain X030]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment