Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   FGE23_RS12120 Genome accession   NZ_CP040672
Coordinates   2342086..2342682 (+) Length   198 a.a.
NCBI ID   WP_070081746.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain X030     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2337086..2347682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGE23_RS12090 - 2337301..2337756 (+) 456 WP_077722141.1 flavodoxin -
  FGE23_RS12095 dapD 2337838..2338548 (+) 711 WP_146276673.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  FGE23_RS12100 - 2338619..2339743 (+) 1125 WP_070081744.1 N-acetyldiaminopimelate deacetylase -
  FGE23_RS12105 - 2339804..2340049 (+) 246 WP_003154596.1 YkuS family protein -
  FGE23_RS12110 - 2340083..2340889 (-) 807 WP_060386912.1 mechanosensitive ion channel family protein -
  FGE23_RS12115 - 2341177..2341635 (+) 459 WP_077722142.1 redoxin domain-containing protein -
  FGE23_RS12120 rok 2342086..2342682 (+) 597 WP_070081746.1 transcriptional regulator Rok Regulator
  FGE23_RS12125 - 2342703..2343695 (-) 993 WP_069473386.1 sporulation protein -
  FGE23_RS12130 - 2343841..2344443 (+) 603 WP_077722144.1 molybdenum cofactor guanylyltransferase -
  FGE23_RS12135 - 2344495..2345514 (+) 1020 WP_146276675.1 molybdopterin-synthase adenylyltransferase MoeB -
  FGE23_RS12140 glp 2345532..2346824 (+) 1293 WP_070081748.1 gephyrin-like molybdotransferase Glp -
  FGE23_RS12145 mobB 2346785..2347306 (+) 522 WP_041482361.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22583.61 Da        Isoelectric Point: 9.6909

>NTDB_id=366373 FGE23_RS12120 WP_070081746.1 2342086..2342682(+) (rok) [Bacillus amyloliquefaciens strain X030]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKNDSLPVLAELAAQEMRSYQKPQ
TQPQSSQQQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=366373 FGE23_RS12120 WP_070081746.1 2342086..2342682(+) (rok) [Bacillus amyloliquefaciens strain X030]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAATGACTCCCTCCCGGTACTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCTCAATCCTCCCAGCAGCAGATGCAGTCTATTACGTCTCTTCCCGCAGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCGAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

87.629

97.98

0.859

Multiple sequence alignment