Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   FE005_RS04870 Genome accession   NZ_CP040461
Coordinates   1047192..1048430 (+) Length   412 a.a.
NCBI ID   WP_138371396.1    Uniprot ID   -
Organism   Enterococcus sp. M190262     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1042192..1053430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FE005_RS04850 (FE005_04850) - 1042619..1043887 (+) 1269 WP_003128975.1 pitrilysin family protein -
  FE005_RS04855 (FE005_04855) - 1043880..1045178 (+) 1299 WP_081131856.1 pitrilysin family protein -
  FE005_RS04860 (FE005_04860) - 1045511..1046416 (+) 906 WP_003128979.1 RodZ domain-containing protein -
  FE005_RS04865 (FE005_04865) pgsA 1046528..1047109 (+) 582 WP_005473048.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FE005_RS04870 (FE005_04870) cinA 1047192..1048430 (+) 1239 WP_138371396.1 competence/damage-inducible protein A Machinery gene
  FE005_RS04875 (FE005_04875) recA 1048534..1049580 (+) 1047 WP_003128984.1 recombinase RecA Machinery gene
  FE005_RS04880 (FE005_04880) rny 1049832..1051406 (+) 1575 WP_029487351.1 ribonuclease Y -
  FE005_RS04885 (FE005_04885) treR 1051515..1052231 (-) 717 WP_003128986.1 trehalose operon repressor -
  FE005_RS04890 (FE005_04890) pgmB 1052285..1052935 (-) 651 WP_003128987.1 beta-phosphoglucomutase -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45159.44 Da        Isoelectric Point: 4.8009

>NTDB_id=364641 FE005_RS04870 WP_138371396.1 1047192..1048430(+) (cinA) [Enterococcus sp. M190262]
MKAEIIAVGTELLLGQVVNTNATFLSEELASLGIEVYYHSVVGDNPKRLEELVTLAENRSDLIVFCGGLGPTEDDLTKQI
VAQHVGQELVRDEAGYEQMLTFFKNGQRFMTENNLRQTLVFKDGTALPNATGLAIGIFYRTATAVYLLLPGPPSELKPMF
IQQARPILQTEFSSEEQLISRVLRFYGIGESALVTELADLIDSQKNPTVAPYAKPNEVTLRLTVKTTDESAGQAKLDELE
QQIQARVGEYFYGYGEHTSLAEVVVDMLKEKKKTVTAAESLTAGLFQATLGDISGVSRVFSGGYVTYAKETKSKMLGINE
DLLTAYGTVSKECAEAMALAAQAKEKADYALSFTGVAGPDELENQRPGTVWIALATNEGVKSKCYHFSRDRAYVRHSAVM
AGLDLLRKELLR

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=364641 FE005_RS04870 WP_138371396.1 1047192..1048430(+) (cinA) [Enterococcus sp. M190262]
ATGAAGGCAGAGATTATTGCAGTAGGGACCGAATTGCTTTTGGGACAGGTGGTGAATACCAATGCAACTTTCTTATCAGA
AGAATTAGCTAGTTTAGGAATCGAAGTTTACTATCATAGTGTTGTAGGGGACAATCCAAAGCGTTTGGAAGAGCTAGTAA
CACTTGCCGAGAATCGCAGTGACTTGATCGTATTTTGCGGTGGTCTCGGACCTACAGAAGATGATTTAACCAAACAAATC
GTTGCACAGCATGTCGGTCAAGAGCTCGTTCGTGACGAAGCAGGGTATGAGCAAATGCTGACCTTTTTCAAAAATGGTCA
GCGTTTTATGACAGAAAATAATTTGAGGCAGACGTTGGTATTCAAAGATGGTACAGCGTTACCTAATGCAACTGGGTTAG
CAATCGGTATCTTCTACCGAACAGCTACAGCGGTATATCTCCTGTTGCCTGGACCACCAAGTGAACTGAAACCTATGTTT
ATCCAACAAGCCCGTCCAATTTTGCAGACAGAGTTTTCATCAGAAGAACAGTTGATTTCTCGAGTATTGCGATTTTATGG
AATTGGAGAATCCGCACTAGTAACTGAACTTGCCGATCTAATTGATTCTCAGAAGAACCCAACGGTCGCACCGTACGCTA
AACCCAATGAAGTAACCTTGCGTTTGACGGTGAAAACTACGGATGAATCGGCAGGACAAGCCAAACTAGATGAATTAGAA
CAACAAATCCAAGCAAGAGTGGGCGAATATTTTTATGGATATGGAGAGCATACATCATTAGCTGAAGTAGTTGTTGATAT
GCTGAAAGAAAAGAAAAAAACTGTGACGGCTGCGGAGAGTTTGACAGCGGGACTCTTTCAAGCGACGCTGGGAGACATCT
CAGGCGTGTCCCGTGTATTTTCTGGTGGTTATGTGACTTATGCTAAAGAGACAAAAAGTAAGATGCTAGGAATCAATGAA
GACTTGCTAACAGCTTATGGAACTGTCAGCAAGGAATGTGCAGAAGCGATGGCGCTTGCTGCCCAAGCCAAAGAAAAAGC
GGATTATGCCCTTTCTTTTACCGGGGTAGCTGGACCAGATGAGCTTGAGAATCAACGCCCAGGAACGGTCTGGATTGCTT
TAGCAACCAATGAAGGTGTGAAAAGCAAGTGCTATCATTTTTCCAGAGATCGTGCATACGTTCGTCATAGTGCAGTAATG
GCAGGATTAGATCTATTACGTAAGGAATTGTTAAGATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

52.619

100

0.536
  cinA Streptococcus mitis NCTC 12261

52.143

100

0.532
  cinA Streptococcus pneumoniae TIGR4

52.143

100

0.532
  cinA Streptococcus pneumoniae Rx1

51.905

100

0.529
  cinA Streptococcus pneumoniae R6

51.905

100

0.529
  cinA Streptococcus pneumoniae D39

51.905

100

0.529
  cinA Streptococcus mutans UA159

51.084

100

0.515
  cinA Bacillus subtilis subsp. subtilis str. 168

47.188

99.272

0.468
  cinA Streptococcus suis isolate S10

42.995

100

0.432

Multiple sequence alignment