Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FDV79_RS14030 Genome accession   NZ_CP040103
Coordinates   2955158..2956381 (+) Length   407 a.a.
NCBI ID   WP_140380223.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain LVP66     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2950158..2961381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDV79_RS14010 (FDV79_15025) ampD 2951193..2951744 (-) 552 WP_140380320.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  FDV79_RS14015 (FDV79_15030) nadC 2951837..2952724 (+) 888 WP_015297249.1 carboxylating nicotinate-nucleotide diphosphorylase -
  FDV79_RS14020 (FDV79_15035) - 2952988..2953449 (+) 462 WP_025541878.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  FDV79_RS14025 (FDV79_15040) pilB 2953449..2955134 (+) 1686 WP_025541880.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FDV79_RS14030 (FDV79_15045) pilC 2955158..2956381 (+) 1224 WP_140380223.1 type II secretion system F family protein Machinery gene
  FDV79_RS14035 (FDV79_15050) pilD 2956446..2957315 (+) 870 WP_015297252.1 A24 family peptidase Machinery gene
  FDV79_RS14040 (FDV79_15055) coaE 2957316..2957930 (+) 615 WP_025523092.1 dephospho-CoA kinase -
  FDV79_RS14045 (FDV79_15060) zapD 2957958..2958698 (+) 741 WP_023624252.1 cell division protein ZapD -
  FDV79_RS14050 (FDV79_15065) yacG 2958767..2958961 (+) 195 WP_005462546.1 DNA gyrase inhibitor YacG -
  FDV79_RS14055 (FDV79_15070) rplS 2959310..2959663 (-) 354 WP_005462554.1 50S ribosomal protein L19 -
  FDV79_RS14060 (FDV79_15075) trmD 2959705..2960448 (-) 744 WP_005462562.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  FDV79_RS14065 (FDV79_15080) rimM 2960476..2961024 (-) 549 WP_005462552.1 ribosome maturation factor RimM -
  FDV79_RS14070 (FDV79_15085) rpsP 2961053..2961301 (-) 249 WP_005379962.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45219.40 Da        Isoelectric Point: 10.3996

>NTDB_id=362187 FDV79_RS14030 WP_140380223.1 2955158..2956381(+) (pilC) [Vibrio parahaemolyticus strain LVP66]
MKTTTPQLKNFRWKGVNSSGKKTSGQTLAMSEIEVRERLDAQHIKIKKLKKSSISFLTKLSHRVKGKDITVFTRQISTML
VTGVPLVQALKLVSDNHKKAEMKSILMSVTRAVEAGTPMSKAMRTASNHFDPLYTDLIATGEQSGNLAEVFERLATYREK
NEQLRAKVIKALIYPAMVILVALGVSFIMLTKVIPEFEKMFVGFGAELPWFTRQVLDLSAWTQNWSPFIALGSISLFISA
RVLSMRSDSFRLILNRSVLKFPVLGAVLSKAAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYVAMRNCNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGIVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=362187 FDV79_RS14030 WP_140380223.1 2955158..2956381(+) (pilC) [Vibrio parahaemolyticus strain LVP66]
ATGAAAACTACGACACCACAATTAAAGAACTTCCGTTGGAAAGGCGTCAACAGCTCAGGGAAAAAGACCTCTGGTCAAAC
TCTGGCAATGAGCGAAATCGAAGTACGAGAGCGCTTAGATGCCCAGCACATCAAAATCAAAAAGCTAAAGAAAAGCAGCA
TCTCTTTTTTGACCAAACTTAGCCATCGCGTAAAAGGAAAAGACATCACGGTTTTCACTCGTCAAATCTCAACGATGCTA
GTAACCGGTGTGCCGCTAGTACAAGCATTGAAATTGGTCTCTGATAACCACAAAAAAGCGGAAATGAAATCCATTTTGAT
GAGTGTAACTCGGGCTGTTGAAGCGGGTACGCCGATGTCCAAAGCGATGCGTACCGCCAGCAACCATTTTGACCCGCTAT
ATACCGACCTGATTGCGACAGGAGAACAATCGGGCAACTTAGCCGAAGTGTTCGAACGCTTAGCTACCTACAGGGAAAAA
AATGAGCAGCTTAGAGCCAAAGTGATCAAGGCTCTAATATATCCAGCCATGGTTATTCTAGTTGCACTGGGAGTATCGTT
TATCATGCTAACCAAGGTCATTCCCGAGTTTGAAAAAATGTTTGTTGGCTTTGGCGCTGAATTGCCATGGTTTACAAGGC
AAGTCTTAGATCTTTCCGCTTGGACACAAAACTGGAGCCCATTTATCGCACTTGGCTCCATCAGTTTATTTATCTCCGCG
AGAGTACTCTCTATGCGTTCTGACTCTTTTCGCTTAATACTCAACCGCTCTGTGCTTAAGTTTCCAGTCCTTGGGGCAGT
TTTATCGAAAGCCGCTATCGCAAAATTTAGTCGAACCCTCGCTACGAGCTTTACGGCGGGCATTCCGATTTTAACCAGTT
TAAAAACCACCTCGAAAACGTCCGGAAATATGCATTATCAATTGGCTATCGAAGAGGTTTATCGCGATACCGCAGCAGGA
ATGCCGATGTATGTTGCAATGCGCAATTGCAACGTGTTCCCTGAGTTGGTGCTGCAAATGGTTATGATCGGCGAAGAATC
CGGCCGACTTGATGACATGCTCAATAAAGTCGCCACAATTTACGAGTTTGAAGTGGACAACACCGTCGATAACCTCAGTA
AAATCTTAGAGCCATTGATTATCGTTTTTTTAGGTATCGTTGTCGGTGGCTTGGTCACAGCAATGTACTTGCCAATCTTT
AACTTAATGAGTGTATTGGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

86.241

100

0.862
  pilC Vibrio cholerae strain A1552

74.074

99.509

0.737
  pilC Acinetobacter baylyi ADP1

42.5

98.28

0.418
  pilC Acinetobacter baumannii D1279779

41.191

99.017

0.408
  pilC Legionella pneumophila strain ERS1305867

40.342

100

0.405
  pilG Neisseria gonorrhoeae MS11

40.494

99.509

0.403
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398
  pilG Neisseria meningitidis 44/76-A

39.901

99.754

0.398

Multiple sequence alignment