Detailed information NTG0362188

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FDV79_RS14035
• Genome accession: NZ_CP040103
• Coordinates: 2956446..2957315 (+)
• Length: 289 a.a.
• NCBI ID: WP_015297252.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain LVP66
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2951446..2962315

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FDV79_RS14015 (FDV79_15030)	nadC	2951837..2952724 (+)	888	WP_015297249.1	carboxylating nicotinate-nucleotide diphosphorylase	-
FDV79_RS14020 (FDV79_15035)	-	2952988..2953449 (+)	462	WP_025541878.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
FDV79_RS14025 (FDV79_15040)	pilB	2953449..2955134 (+)	1686	WP_025541880.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FDV79_RS14030 (FDV79_15045)	pilC	2955158..2956381 (+)	1224	WP_140380223.1	type II secretion system F family protein	Machinery gene
FDV79_RS14035 (FDV79_15050)	pilD	2956446..2957315 (+)	870	WP_015297252.1	A24 family peptidase	Machinery gene
FDV79_RS14040 (FDV79_15055)	coaE	2957316..2957930 (+)	615	WP_025523092.1	dephospho-CoA kinase	-
FDV79_RS14045 (FDV79_15060)	zapD	2957958..2958698 (+)	741	WP_023624252.1	cell division protein ZapD	-
FDV79_RS14050 (FDV79_15065)	yacG	2958767..2958961 (+)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
FDV79_RS14055 (FDV79_15070)	rplS	2959310..2959663 (-)	354	WP_005462554.1	50S ribosomal protein L19	-
FDV79_RS14060 (FDV79_15075)	trmD	2959705..2960448 (-)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
FDV79_RS14065 (FDV79_15080)	rimM	2960476..2961024 (-)	549	WP_005462552.1	ribosome maturation factor RimM	-
FDV79_RS14070 (FDV79_15085)	rpsP	2961053..2961301 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32371.47 Da
• Isoelectric Point: 7.1971

>NTDB_id=362188 FDV79_RS14035 WP_015297252.1 2956446..2957315(+) (pilD) [Vibrio parahaemolyticus strain LVP66]
MEVLQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=362188 FDV79_RS14035 WP_015297252.1 2956446..2957315(+) (pilD) [Vibrio parahaemolyticus strain LVP66]
ATGGAAGTGTTGCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCTGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGGTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGACCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.927	100	0.889
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	47.101	95.502	0.45