Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FDV78_RS03825 Genome accession   NZ_CP040101
Coordinates   784205..785428 (-) Length   407 a.a.
NCBI ID   WP_005462561.1    Uniprot ID   A0A9P2QS90
Organism   Vibrio parahaemolyticus strain LVP2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 779205..790428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDV78_RS03785 (FDV78_04095) rpsP 779234..779482 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  FDV78_RS03790 (FDV78_04100) rimM 779511..780059 (+) 549 WP_005462552.1 ribosome maturation factor RimM -
  FDV78_RS03795 (FDV78_04105) trmD 780087..780830 (+) 744 WP_179000448.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  FDV78_RS03800 (FDV78_04110) rplS 780872..781225 (+) 354 WP_005462554.1 50S ribosomal protein L19 -
  FDV78_RS03805 (FDV78_04115) yacG 781625..781819 (-) 195 WP_005462546.1 DNA gyrase inhibitor YacG -
  FDV78_RS03810 (FDV78_04120) zapD 781888..782628 (-) 741 WP_179000449.1 cell division protein ZapD -
  FDV78_RS03815 (FDV78_04125) coaE 782656..783270 (-) 615 WP_179000450.1 dephospho-CoA kinase -
  FDV78_RS03820 (FDV78_04130) pilD 783271..784140 (-) 870 WP_025501249.1 A24 family peptidase Machinery gene
  FDV78_RS03825 (FDV78_04135) pilC 784205..785428 (-) 1224 WP_005462561.1 type II secretion system F family protein Machinery gene
  FDV78_RS03830 (FDV78_04140) pilB 785453..787138 (-) 1686 WP_179000451.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FDV78_RS03835 (FDV78_04145) - 787143..787571 (-) 429 WP_179000452.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  FDV78_RS03840 (FDV78_04150) nadC 787835..788722 (-) 888 WP_025523107.1 carboxylating nicotinate-nucleotide diphosphorylase -
  FDV78_RS03845 (FDV78_04155) ampD 788815..789366 (+) 552 WP_005479703.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45234.41 Da        Isoelectric Point: 10.4368

>NTDB_id=362140 FDV78_RS03825 WP_005462561.1 784205..785428(-) (pilC) [Vibrio parahaemolyticus strain LVP2]
MKTTTPQLKNFRWKGVNSSGKKTSGQTLAMSEIEVRERLDAQHIKIKKLKKSSISFLTKLSHRVKGKDITVFTRQISTML
VTGVPLVQALKLVSDNHKKAEMKSILMSVTRAVEAGTPMSKAMRTASNHFDPLYTDLIATGEQSGNLAEVFERLATYREK
NEQLRAKVIKALIYPAMVILVALGVSFIMLTKVIPEFEKMFVGFGAELPWFTRQVLDLSAWTQNWSPFIALGSISLFISA
RVLSKRSDSFRLMLNRSVLKFPVLGAVLSKAAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYVAMRNCNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGIVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=362140 FDV78_RS03825 WP_005462561.1 784205..785428(-) (pilC) [Vibrio parahaemolyticus strain LVP2]
ATGAAAACTACGACACCACAATTAAAGAACTTCCGTTGGAAAGGCGTTAACAGCTCAGGGAAAAAGACCTCTGGTCAAAC
TCTGGCAATGAGCGAAATCGAAGTACGAGAGCGCTTAGATGCCCAGCACATCAAAATCAAAAAGCTAAAGAAAAGCAGCA
TCTCTTTTTTGACCAAACTTAGCCATCGCGTAAAAGGAAAAGACATCACGGTTTTCACTCGTCAAATCTCAACGATGCTA
GTAACTGGTGTGCCACTAGTACAAGCATTGAAATTGGTCTCTGATAACCACAAAAAGGCGGAAATGAAATCCATTTTGAT
GAGTGTAACTCGGGCTGTTGAAGCGGGTACGCCGATGTCCAAAGCGATGCGTACCGCCAGCAACCATTTTGACCCGCTAT
ATACCGACCTGATTGCGACAGGAGAACAATCGGGCAACTTAGCCGAAGTGTTCGAACGCTTAGCTACCTACAGGGAAAAA
AATGAGCAGCTTAGAGCCAAAGTGATCAAGGCTCTAATATATCCAGCCATGGTTATTCTAGTTGCACTGGGAGTATCGTT
TATCATGCTAACCAAGGTCATTCCCGAGTTTGAAAAAATGTTTGTTGGCTTTGGCGCTGAATTGCCATGGTTTACAAGGC
AAGTCTTAGATCTTTCCGCTTGGACACAAAACTGGAGCCCATTTATCGCACTTGGTTCCATCAGTTTATTTATCTCCGCG
AGAGTACTCTCTAAGCGTTCAGATTCTTTTCGTTTAATGCTCAACCGATCTGTACTTAAGTTTCCAGTCCTTGGGGCGGT
TTTATCGAAAGCCGCTATCGCAAAATTTAGTCGAACACTCGCTACGAGCTTTACGGCGGGCATTCCGATTCTAACCAGTT
TAAAAACCACCTCGAAAACGTCCGGAAATATGCATTATCAATTGGCTATCGAAGAGGTTTATCGCGATACCGCAGCAGGA
ATGCCGATGTATGTTGCAATGCGCAATTGCAACGTGTTCCCTGAGTTGGTGCTGCAAATGGTTATGATCGGCGAAGAATC
CGGCCGACTTGACGATATGCTCAATAAAGTCGCCACAATTTACGAGTTTGAAGTGGACAACACCGTCGATAACCTCAGTA
AAATCTTAGAACCATTAATTATCGTTTTTTTAGGTATCGTTGTCGGTGGCCTGGTCACAGCAATGTACTTGCCAATCTTT
AACTTAATGAGTGTATTGGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

86.241

100

0.862
  pilC Vibrio cholerae strain A1552

74.321

99.509

0.74
  pilC Acinetobacter baylyi ADP1

42.75

98.28

0.42
  pilC Acinetobacter baumannii D1279779

41.439

99.017

0.41
  pilG Neisseria gonorrhoeae MS11

40.494

99.509

0.403
  pilG Neisseria meningitidis 44/76-A

40.247

99.509

0.4
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398
  pilC Legionella pneumophila strain ERS1305867

39.803

100

0.398

Multiple sequence alignment