Detailed information NTG0362139

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FDV78_RS03820
• Genome accession: NZ_CP040101
• Coordinates: 783271..784140 (-)
• Length: 289 a.a.
• NCBI ID: WP_025501249.1
• Uniprot ID: A0AA46L6W6
• Organism: Vibrio parahaemolyticus strain LVP2
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 778271..789140

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FDV78_RS03785 (FDV78_04095)	rpsP	779234..779482 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
FDV78_RS03790 (FDV78_04100)	rimM	779511..780059 (+)	549	WP_005462552.1	ribosome maturation factor RimM	-
FDV78_RS03795 (FDV78_04105)	trmD	780087..780830 (+)	744	WP_179000448.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
FDV78_RS03800 (FDV78_04110)	rplS	780872..781225 (+)	354	WP_005462554.1	50S ribosomal protein L19	-
FDV78_RS03805 (FDV78_04115)	yacG	781625..781819 (-)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
FDV78_RS03810 (FDV78_04120)	zapD	781888..782628 (-)	741	WP_179000449.1	cell division protein ZapD	-
FDV78_RS03815 (FDV78_04125)	coaE	782656..783270 (-)	615	WP_179000450.1	dephospho-CoA kinase	-
FDV78_RS03820 (FDV78_04130)	pilD	783271..784140 (-)	870	WP_025501249.1	A24 family peptidase	Machinery gene
FDV78_RS03825 (FDV78_04135)	pilC	784205..785428 (-)	1224	WP_005462561.1	type II secretion system F family protein	Machinery gene
FDV78_RS03830 (FDV78_04140)	pilB	785453..787138 (-)	1686	WP_179000451.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FDV78_RS03835 (FDV78_04145)	-	787143..787571 (-)	429	WP_179000452.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
FDV78_RS03840 (FDV78_04150)	nadC	787835..788722 (-)	888	WP_025523107.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32377.47 Da
• Isoelectric Point: 7.1970

>NTDB_id=362139 FDV78_RS03820 WP_025501249.1 783271..784140(-) (pilD) [Vibrio parahaemolyticus strain LVP2]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=362139 FDV78_RS03820 WP_025501249.1 783271..784140(-) (pilD) [Vibrio parahaemolyticus strain LVP2]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTAGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTACTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGATATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGGTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAAAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	89.619	100	0.896
pilD	Vibrio cholerae strain A1552	73.611	99.654	0.734
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	46.739	95.502	0.446