Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FCN78_RS02185 Genome accession   NZ_CP040021
Coordinates   441532..442746 (-) Length   404 a.a.
NCBI ID   WP_069363365.1    Uniprot ID   A0AB36JX97
Organism   Salinivibrio kushneri strain AL184     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 436532..447746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FCN78_RS02160 (FCN78_02160) mutT 438571..438966 (+) 396 WP_069363360.1 8-oxo-dGTP diphosphatase MutT -
  FCN78_RS02165 (FCN78_02165) yacG 439009..439209 (-) 201 WP_069363361.1 DNA gyrase inhibitor YacG -
  FCN78_RS02170 (FCN78_02170) zapD 439220..439960 (-) 741 WP_077659059.1 cell division protein ZapD -
  FCN78_RS02175 (FCN78_02175) coaE 439984..440598 (-) 615 WP_077659060.1 dephospho-CoA kinase -
  FCN78_RS02180 (FCN78_02180) pilD 440598..441467 (-) 870 WP_077659061.1 prepilin peptidase Machinery gene
  FCN78_RS02185 (FCN78_02185) pilC 441532..442746 (-) 1215 WP_069363365.1 type II secretion system F family protein Machinery gene
  FCN78_RS02190 (FCN78_02190) pilB 442756..444438 (-) 1683 WP_077659062.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FCN78_RS02195 (FCN78_02195) - 444463..444879 (-) 417 WP_077659063.1 pilin -
  FCN78_RS02200 (FCN78_02200) nadC 445126..446031 (-) 906 WP_106407178.1 carboxylating nicotinate-nucleotide diphosphorylase -
  FCN78_RS02205 (FCN78_02205) - 446192..447187 (+) 996 WP_077659064.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 44992.72 Da        Isoelectric Point: 10.1795

>NTDB_id=361672 FCN78_RS02185 WP_069363365.1 441532..442746(-) (pilC) [Salinivibrio kushneri strain AL184]
MAKSTLFIFHWRQAAARGEKKGQVFAYTERDARQELANQSIVPSRLIRRRLSSFQQRRHKAKAADITQFSRDLTTLLESG
IPIVQALNLMALNQVKAEMRLLVRHIRQQLEAGTNLSEALAHASPLFDRFYCDLVATGEQTGQLPEIFARLTLYREKQAL
LRSKVIKAMIYPSIVVSVALGVSAYLLVSVIPKFKRIFDSFGADLPWLTQQVLALSDIVSQHALTITLIVAGLAAAHQLL
QRKNTTYQYHYHRWLLRLPVIGEVVSKACIAKFSRTLATTFSAGIPLLSGLQAATKSMTNAYYVHALKAVYQHTATGIPL
YQALRDSNSFPVMVTQMVMIGEESGSLDNMLNRIAQIYEAEVDNTVDNLGKIIEPLLILVLGLLIGGLVVAMYLPIFNLM
SVLG

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=361672 FCN78_RS02185 WP_069363365.1 441532..442746(-) (pilC) [Salinivibrio kushneri strain AL184]
ATGGCCAAATCCACCCTGTTTATCTTTCATTGGCGTCAAGCCGCCGCCCGTGGTGAAAAAAAAGGGCAGGTGTTCGCCTA
CACAGAGCGAGACGCACGCCAAGAGCTAGCGAACCAATCTATCGTCCCCAGCCGCCTCATACGCCGCCGGCTATCGAGCT
TTCAGCAGCGTCGTCATAAAGCCAAGGCAGCGGATATCACCCAGTTTTCACGTGATCTCACCACCTTGCTTGAGTCTGGG
ATCCCTATCGTACAAGCCCTGAACCTCATGGCGCTCAATCAGGTCAAAGCCGAAATGCGCTTGCTGGTGCGTCATATTCG
CCAGCAACTGGAGGCGGGAACCAATTTGAGTGAGGCGCTAGCGCACGCGAGCCCCTTGTTTGATCGCTTTTATTGCGATT
TAGTCGCAACGGGTGAGCAAACCGGGCAACTGCCGGAGATTTTTGCTCGCTTAACCCTATACCGTGAAAAGCAGGCGTTA
CTTCGCAGTAAAGTCATCAAAGCCATGATTTATCCCAGCATCGTGGTCAGCGTGGCCTTGGGCGTCAGTGCCTACCTGCT
GGTGTCCGTGATCCCGAAGTTTAAACGTATTTTTGATTCCTTCGGGGCCGATTTGCCTTGGCTGACCCAACAAGTGCTCG
CCTTATCCGACATTGTGAGCCAGCACGCGTTGACCATCACGCTGATCGTGGCGGGTCTTGCCGCCGCGCACCAGTTGCTA
CAGCGTAAAAACACGACCTACCAATATCACTATCATCGCTGGCTACTCCGACTGCCCGTCATTGGTGAAGTGGTGAGCAA
AGCCTGCATCGCCAAGTTTTCCCGTACTCTAGCCACCACGTTTAGTGCCGGTATTCCGTTACTCTCTGGCTTACAAGCCG
CGACGAAATCCATGACCAACGCGTATTATGTCCACGCACTCAAGGCGGTGTATCAGCACACGGCCACTGGTATTCCGCTT
TATCAAGCCTTGCGTGACAGTAACAGCTTCCCCGTGATGGTGACGCAAATGGTGATGATCGGCGAAGAGTCGGGGTCGCT
CGATAATATGCTCAACCGCATCGCACAAATCTATGAAGCCGAAGTCGACAACACCGTAGACAACCTCGGTAAAATCATCG
AGCCCCTGTTAATTTTAGTACTCGGGCTATTGATTGGCGGCTTAGTGGTGGCCATGTACTTACCCATTTTCAATCTGATG
TCTGTTCTTGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(69-192)

Type II secretion system (T2SS), protein F (T2SSF)

(273-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

51.385

98.267

0.505
  pilC Vibrio campbellii strain DS40M4

50.378

98.267

0.495
  pilG Neisseria meningitidis 44/76-A

39.801

99.505

0.396
  pilG Neisseria gonorrhoeae MS11

39.552

99.505

0.394
  pilC Acinetobacter baumannii D1279779

39.698

98.515

0.391
  pilC Acinetobacter baylyi ADP1

38.945

98.515

0.384
  pilC Legionella pneumophila strain ERS1305867

38.539

98.267

0.379

Multiple sequence alignment