Detailed information NTG0361671

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FCN78_RS02180
• Genome accession: NZ_CP040021
• Coordinates: 440598..441467 (-)
• Length: 289 a.a.
• NCBI ID: WP_077659061.1
• Uniprot ID: A0AB36JX75
• Organism: Salinivibrio kushneri strain AL184
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 435598..446467

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FCN78_RS02155 (FCN78_02155)	secA	435776..438508 (+)	2733	WP_077456477.1	preprotein translocase subunit SecA	-
FCN78_RS02160 (FCN78_02160)	mutT	438571..438966 (+)	396	WP_069363360.1	8-oxo-dGTP diphosphatase MutT	-
FCN78_RS02165 (FCN78_02165)	yacG	439009..439209 (-)	201	WP_069363361.1	DNA gyrase inhibitor YacG	-
FCN78_RS02170 (FCN78_02170)	zapD	439220..439960 (-)	741	WP_077659059.1	cell division protein ZapD	-
FCN78_RS02175 (FCN78_02175)	coaE	439984..440598 (-)	615	WP_077659060.1	dephospho-CoA kinase	-
FCN78_RS02180 (FCN78_02180)	pilD	440598..441467 (-)	870	WP_077659061.1	prepilin peptidase	Machinery gene
FCN78_RS02185 (FCN78_02185)	pilC	441532..442746 (-)	1215	WP_069363365.1	type II secretion system F family protein	Machinery gene
FCN78_RS02190 (FCN78_02190)	pilB	442756..444438 (-)	1683	WP_077659062.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FCN78_RS02195 (FCN78_02195)	-	444463..444879 (-)	417	WP_077659063.1	pilin	-
FCN78_RS02200 (FCN78_02200)	nadC	445126..446031 (-)	906	WP_106407178.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31760.79 Da
• Isoelectric Point: 6.8125

>NTDB_id=361671 FCN78_RS02180 WP_077659061.1 440598..441467(-) (pilD) [Salinivibrio kushneri strain AL184]
MLIFSSPLFIFFAGLFGLIIGSFLNVVIARVPIMMERRWRQECLATFPDADIDAPDAQRFDLCFPASHCPTCQQPIAWYD
NIPLLSWLMLKGRCRQCGTAISPRYPLVEVTSAIVCVLPAWLISSPAWAIAVMAASLTLLALTLIDWETLLLPDQLTLPL
MWAGIGLALCGISPITLSESVIGAMVGYVSLWSLFWAFKLTTGKEGMGYGDFKLFAALGAWVGWQALPLLILFASLSGAI
VGGLLLRQQQKSLQHAFAFGPFIAVAGWLSLLWGDSLLHWYLSHILGVR

Nucleotide

• Length: 870 bp

>NTDB_id=361671 FCN78_RS02180 WP_077659061.1 440598..441467(-) (pilD) [Salinivibrio kushneri strain AL184]
ATGTTGATATTCTCATCACCGTTATTCATTTTTTTTGCTGGCTTATTTGGTCTGATTATCGGTAGCTTTTTAAATGTGGT
CATCGCACGCGTGCCCATTATGATGGAACGCCGTTGGCGTCAAGAATGCTTGGCGACGTTTCCCGATGCTGACATTGACG
CGCCTGATGCGCAGCGCTTTGATTTGTGTTTTCCCGCCTCACACTGCCCAACGTGCCAGCAGCCGATTGCCTGGTACGAT
AATATTCCTTTGCTCAGTTGGCTGATGTTAAAAGGCCGCTGCCGTCAGTGTGGCACGGCGATCAGTCCACGCTACCCACT
GGTCGAGGTCACCAGTGCTATTGTCTGTGTGTTACCGGCATGGCTTATTTCCTCACCGGCATGGGCCATCGCGGTGATGG
CGGCAAGTCTCACCTTGCTGGCGCTGACTCTCATTGATTGGGAAACCCTGTTGCTGCCCGACCAACTCACCTTACCCTTA
ATGTGGGCCGGAATCGGCCTCGCTCTCTGCGGCATCAGTCCTATCACCCTCAGTGAAAGTGTCATTGGTGCTATGGTCGG
TTATGTCAGCCTTTGGAGCCTCTTTTGGGCCTTTAAACTTACCACTGGCAAAGAAGGCATGGGCTATGGTGATTTTAAAC
TGTTTGCGGCACTGGGCGCTTGGGTCGGTTGGCAAGCTTTGCCGCTACTGATTTTATTCGCCTCACTCAGTGGCGCTATC
GTTGGGGGATTATTGCTTCGCCAACAACAAAAGAGCCTGCAGCACGCGTTTGCCTTTGGCCCCTTTATTGCCGTCGCAGG
TTGGCTAAGTCTGCTTTGGGGCGATAGCCTGTTACACTGGTATCTTTCACACATTCTAGGAGTGCGCTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (15-121)

• Type IV leader peptidase family (Peptidase_A24) (134-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56.429	96.886	0.547
pilD	Vibrio campbellii strain DS40M4	53.025	97.232	0.516
pilD	Acinetobacter baumannii D1279779	47.985	94.464	0.453
pilD	Acinetobacter nosocomialis M2	47.619	94.464	0.45
pilD	Neisseria gonorrhoeae MS11	43.007	98.962	0.426