Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   FCJ76_RS09150 Genome accession   NZ_CP039935
Coordinates   1747840..1749090 (+) Length   416 a.a.
NCBI ID   WP_086343848.1    Uniprot ID   -
Organism   Bacillus subtilis strain H19     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1742840..1754090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FCJ76_RS09120 ymfH 1742930..1744216 (+) 1287 WP_086343846.1 pitrilysin family protein -
  FCJ76_RS09125 efpI 1744271..1744999 (+) 729 WP_086343847.1 EF-P-5 aminopentanone reductase -
  FCJ76_RS09130 ymfJ 1745080..1745337 (+) 258 WP_003245199.1 DUF3243 domain-containing protein -
  FCJ76_RS09135 - 1745467..1746258 (+) 792 WP_003220998.1 YmfK family protein -
  FCJ76_RS09140 rodZ 1746325..1747191 (+) 867 WP_209271381.1 RodZ family helix-turn-helix domain-containing protein -
  FCJ76_RS09145 pgsA 1747241..1747822 (+) 582 WP_003244753.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FCJ76_RS09150 cinA 1747840..1749090 (+) 1251 WP_086343848.1 competence/damage-inducible protein A Machinery gene
  FCJ76_RS09155 recA 1749263..1750309 (+) 1047 WP_003245789.1 recombinase RecA Machinery gene
  FCJ76_RS09160 pbpX 1750477..1751652 (+) 1176 WP_042975804.1 serine hydrolase domain-containing protein -
  FCJ76_RS09165 rny 1751928..1753490 (+) 1563 WP_003221010.1 ribonuclease Y -

Sequence


Protein


Download         Length: 416 a.a.        Molecular weight: 45468.74 Da        Isoelectric Point: 5.2505

>NTDB_id=361126 FCJ76_RS09150 WP_086343848.1 1747840..1749090(+) (cinA) [Bacillus subtilis strain H19]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVISIAEERSDFIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTEHESRYYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVKELSIACKEKGITISAAESFTGGLFSEWLTDHSGASKLFAGGVVCYTNDVKQNVLG
VKKETLDRFGAVSKECASELAKGVQKLTGSDIGISFTGVAGPDAQEGHEPGHVFIGISANGKEEVHEFHFAGSRTGIRKR
GAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=361126 FCJ76_RS09150 WP_086343848.1 1747840..1749090(+) (cinA) [Bacillus subtilis strain H19]
ATGGAATTTCCAAAAAAAGCAGAAATAATTGCAGTCGGTTCAGAGTTGCTGCTTGGTCAAATCGCCAATACAAATGCTCA
ATTTATCAGCAAACAGCTCGCTGAAATCGGGGTCAACGTATTTTATCATACAGCGGTCGGAGATAACCCGGAGCGGCTGA
AGCAGGTCATCAGCATTGCTGAAGAACGCTCTGACTTCATTATTTTTTCAGGAGGGCTTGGACCCACAAAAGATGATCTG
ACGAAAGAAACGATTGCAAATACGCTGGGACGTCCGCTTGTGTTAAATGATGAGGCATTCCAATCCATTGAGGACTATTT
CAAACGAACAAAACGCACGATGTCACCTAATAACCGAAAACAGGCGCTTGTGATCGAAGGCTCTGACGTGCTGGCGAATC
ACTTTGGAATGGCCCCGGGTATGCTCACAGAGCATGAATCACGCTATTATATGCTTCTTCCTGGACCGCCGAGCGAATTG
CGTCCAATGTTTGAAAACGAGGCAAAGCCTCTTCTGCTGAAAAAGATGGGTTCAAATGAAAAAATTGTGTCAACTGTTCT
TCGCTTTTTCGGTATCGGTGAATCTCAGCTTGAAGCCGATTTGGAAGATATTATCGATGCACAAACCAATCCGACAATTG
CGCCTTTGGCGGCTGATGGAGAGGTGACGCTGCGTCTGACAGCCAAACACGCCGATGAAAAGGAAACAGAGCGTCTGTTA
AAAGAAACAGAGGCCGTTATCTTAGAGCGTGTCGGTGAATTTTTCTATGGTTACGATGATACTTCTCTTGTAAAAGAGCT
ATCTATAGCGTGCAAGGAAAAAGGCATTACAATTTCTGCGGCAGAAAGCTTTACCGGAGGGCTGTTTTCTGAATGGCTGA
CGGATCATAGCGGTGCCTCAAAATTATTTGCCGGGGGCGTTGTTTGCTATACAAACGACGTGAAGCAGAATGTGCTTGGT
GTCAAGAAGGAAACATTAGATCGTTTTGGGGCGGTCAGCAAGGAGTGCGCATCCGAACTGGCTAAGGGTGTTCAAAAACT
CACTGGCAGCGATATCGGCATTAGCTTTACTGGTGTAGCAGGACCTGATGCTCAAGAAGGGCATGAGCCTGGGCATGTGT
TTATCGGCATTTCCGCAAATGGTAAAGAAGAGGTTCACGAGTTTCACTTTGCGGGCTCCAGAACGGGGATCAGAAAACGC
GGCGCTAAATACGGCTGCCATTTAATCTTAAAGCTTTTAGAGCAAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

99.76

100

0.998

  cinA Streptococcus mitis NCTC 12261

45.694

100

0.459

  cinA Streptococcus mitis SK321

45.694

100

0.459

  cinA Streptococcus pneumoniae TIGR4

45.455

100

0.457

  cinA Streptococcus mutans UA159

46.005

99.279

0.457

  cinA Streptococcus pneumoniae Rx1

45.215

100

0.454

  cinA Streptococcus pneumoniae R6

45.215

100

0.454

  cinA Streptococcus pneumoniae D39

44.976

100

0.452

  cinA Streptococcus suis isolate S10

41.379

90.625

0.375


Multiple sequence alignment