Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FAH67_RS00730 Genome accession   NZ_CP039886
Coordinates   132537..134033 (-) Length   498 a.a.
NCBI ID   WP_003682057.1    Uniprot ID   C0EQL0
Organism   Neisseria flavescens strain ATCC 13120     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 127537..139033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAH67_RS00705 (FAH67_00705) comE 128810..129097 (+) 288 WP_039863774.1 helix-hairpin-helix domain-containing protein Machinery gene
  FAH67_RS00710 (FAH67_00710) comP 129362..129775 (+) 414 WP_341869382.1 type IV pilin protein Machinery gene
  FAH67_RS00715 (FAH67_00715) - 129854..130678 (-) 825 WP_003682048.1 undecaprenyl-diphosphate phosphatase -
  FAH67_RS00720 (FAH67_00720) dsbA1 130723..131364 (-) 642 WP_003682051.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  FAH67_RS00725 (FAH67_00725) - 131378..132382 (-) 1005 WP_112890839.1 SPOR domain-containing protein -
  FAH67_RS00730 (FAH67_00730) comM 132537..134033 (-) 1497 WP_003682057.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FAH67_RS00735 (FAH67_00735) - 134047..134367 (-) 321 WP_003682060.1 accessory factor UbiK family protein -
  FAH67_RS00740 (FAH67_00740) metK 134477..135646 (-) 1170 WP_003682062.1 methionine adenosyltransferase -
  FAH67_RS00750 (FAH67_00750) - 136039..136914 (+) 876 WP_003682066.1 lysophospholipid acyltransferase family protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53849.92 Da        Isoelectric Point: 7.5739

>NTDB_id=360882 FAH67_RS00730 WP_003682057.1 132537..134033(-) (comM) [Neisseria flavescens strain ATCC 13120]
MSLALVYSRALSGMNAPLVEVEAHLANGLPHFNIVGLPDTEVKESRDRVRAAIIQSGFDFPAKKITVNLAPADLPKESGR
FDLPIALGILAASGQINPEKLSQYEFAGELALSGLLRPVRGALAMAWQGMQAGRSFVLPQENAEQAAVMRGIAVYGARSL
GEVAAHLNGIEPLIQTECKLTQRPSEQSKIPDLADVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLSQRLPGILPPL
TEDELVEVWALRSLLPNHQQQLDSNRPFRSPHHSASSAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPL
ENGEIHISRAARQAVYPAKFQLVAAMNPCPCGYLGHPSKPCRCTPESVARYRNKISGPLLDRIDLTIEVPSLSAAELMQQ
EAGESSATVLERVTTARKIQYNRQGKVNAELSVGELDGKARIQKEAQEALGTMLEKLSLSARSFHRIMRVARTLADLAGD
EEVSKTHVMKAIGFRRAL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=360882 FAH67_RS00730 WP_003682057.1 132537..134033(-) (comM) [Neisseria flavescens strain ATCC 13120]
ATGTCGCTTGCTTTGGTTTACAGCCGCGCCTTAAGCGGCATGAATGCGCCGTTGGTCGAAGTGGAAGCCCACCTTGCCAA
CGGCTTGCCACATTTCAATATCGTCGGTTTGCCCGATACTGAAGTCAAAGAAAGCCGCGACCGTGTGCGTGCCGCCATCA
TCCAAAGCGGCTTCGACTTTCCCGCCAAGAAAATTACCGTCAACCTCGCACCGGCCGACCTCCCAAAAGAATCCGGCCGT
TTCGATTTGCCGATTGCCTTAGGCATTCTTGCCGCATCGGGACAAATCAATCCTGAAAAGCTCTCGCAATATGAGTTTGC
CGGAGAATTGGCACTATCCGGCCTGCTGCGTCCCGTACGCGGCGCGCTGGCTATGGCATGGCAAGGAATGCAGGCTGGCC
GTTCGTTCGTCTTGCCGCAAGAAAATGCCGAACAGGCTGCCGTCATGCGCGGTATCGCGGTTTATGGTGCACGTTCTTTA
GGCGAAGTGGCCGCGCATTTAAACGGTATCGAACCGTTGATACAAACTGAATGCAAGCTGACGCAAAGGCCGTCTGAACA
AAGTAAAATTCCTGATTTAGCCGATGTTAAAGGCCAGCACACCGCCCGCCTTGCTTTGGAAATCGCAGCGGCAGGCGGAC
ACAGCCTGTTGATGATGGGCCCTCCGGGTACGGGCAAATCCATGCTTTCGCAACGTTTGCCCGGCATCCTTCCGCCTTTG
ACCGAAGACGAATTGGTCGAAGTCTGGGCATTGCGTTCGCTCCTGCCCAACCATCAACAACAACTCGACAGCAACCGTCC
TTTCCGCAGCCCTCATCACAGCGCCAGCTCGGCTGCCATGGTAGGCGGCGGTTCAGACCCACGTCCGGGCGAAATCTCAT
TGGCACACCACGGAGTGTTGTTTTTAGACGAATTGCCCGAGTTTGACCGTAAAGTATTAGAAGTATTGCGCGAGCCTTTG
GAAAACGGCGAAATCCATATTTCACGCGCCGCTCGCCAAGCAGTTTATCCGGCCAAGTTCCAACTTGTCGCCGCCATGAA
CCCCTGCCCTTGCGGCTATCTTGGCCATCCGTCCAAACCTTGCCGCTGCACGCCTGAAAGCGTTGCCCGCTACCGCAACA
AAATTTCAGGGCCATTGCTCGACCGTATTGATTTAACCATCGAAGTACCCAGCCTTTCCGCTGCCGAGCTGATGCAACAA
GAAGCAGGCGAATCCAGTGCCACCGTATTGGAACGCGTTACCACCGCACGAAAAATCCAATACAACAGACAAGGCAAAGT
CAATGCAGAACTGAGTGTCGGAGAACTCGATGGCAAAGCCCGCATCCAAAAAGAAGCGCAAGAAGCCTTGGGAACCATGC
TTGAAAAACTGTCCCTTTCCGCACGAAGTTTCCACCGCATCATGCGCGTTGCCCGTACACTGGCCGATTTAGCAGGGGAC
GAAGAAGTCAGCAAAACCCATGTGATGAAAGCCATCGGCTTCCGTCGCGCCCTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C0EQL0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.789

100

0.532
  comM Vibrio campbellii strain DS40M4

52

100

0.522
  comM Haemophilus influenzae Rd KW20

49.9

100

0.5
  comM Glaesserella parasuis strain SC1401

49.402

100

0.498
  comM Legionella pneumophila str. Paris

46.68

100

0.48
  comM Legionella pneumophila strain ERS1305867

46.68

100

0.48
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.96

100

0.446

Multiple sequence alignment