Detailed information
Bioinformatically predicted
Overview
| Name | comE | Type | Machinery gene |
| Locus tag | FAH67_RS00705 | Genome accession | NZ_CP039886 |
| Coordinates | 128810..129097 (+) | Length | 95 a.a. |
| NCBI ID | WP_039863774.1 | Uniprot ID | - |
| Organism | Neisseria flavescens strain ATCC 13120 | ||
| Function | DNA binding (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 116545..129775 | 128810..129097 | within | 0 |
Gene organization within MGE regions
Location: 116545..129775
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FAH67_RS00640 (FAH67_00640) | - | 116545..116844 (+) | 300 | WP_003680004.1 | hypothetical protein | - |
| FAH67_RS11655 | - | 116963..117089 (+) | 127 | Protein_123 | IS5/IS1182 family transposase | - |
| FAH67_RS00645 (FAH67_00645) | - | 117383..118573 (+) | 1191 | WP_003680002.1 | efflux RND transporter periplasmic adaptor subunit | - |
| FAH67_RS00650 (FAH67_00650) | - | 118675..120201 (+) | 1527 | WP_003680001.1 | DHA2 family efflux MFS transporter permease subunit | - |
| FAH67_RS11660 | - | 120346..120609 (+) | 264 | WP_208648187.1 | transposase | - |
| FAH67_RS11665 | - | 120627..121109 (+) | 483 | WP_112890680.1 | IS5 family transposase | - |
| FAH67_RS00660 (FAH67_00660) | - | 121229..121633 (+) | 405 | WP_003682599.1 | hypothetical protein | - |
| FAH67_RS00670 (FAH67_00670) | thrB | 121815..122732 (-) | 918 | WP_003682602.1 | homoserine kinase | - |
| FAH67_RS00705 (FAH67_00705) | comE | 128810..129097 (+) | 288 | WP_039863774.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| FAH67_RS00710 (FAH67_00710) | comP | 129362..129775 (+) | 414 | WP_341869382.1 | type IV pilin protein | Machinery gene |
Sequence
Protein
Download Length: 95 a.a. Molecular weight: 9791.48 Da Isoelectric Point: 10.4923
>NTDB_id=360879 FAH67_RS00705 WP_039863774.1 128810..129097(+) (comE) [Neisseria flavescens strain ATCC 13120]
MKKFLFGAFAAVCAAFSLAAVNINTASSVELEALPGIGPAKAKSIVEYRQKNGAFKSVEELKNVKGIGDAVLNKLKAEAT
VSSAAPKAAQPAVKK
MKKFLFGAFAAVCAAFSLAAVNINTASSVELEALPGIGPAKAKSIVEYRQKNGAFKSVEELKNVKGIGDAVLNKLKAEAT
VSSAAPKAAQPAVKK
Nucleotide
Download Length: 288 bp
>NTDB_id=360879 FAH67_RS00705 WP_039863774.1 128810..129097(+) (comE) [Neisseria flavescens strain ATCC 13120]
ATGAAGAAATTTTTATTTGGTGCGTTTGCCGCCGTTTGTGCGGCGTTCTCTTTGGCTGCCGTGAACATCAATACTGCGTC
TTCTGTCGAACTGGAGGCCTTGCCGGGTATCGGTCCGGCTAAGGCGAAATCGATTGTGGAATACCGTCAGAAGAACGGTG
CGTTCAAATCGGTGGAGGAGCTGAAAAACGTGAAGGGCATCGGTGATGCGGTGCTGAACAAGTTGAAGGCGGAGGCGACG
GTTTCTTCTGCTGCGCCTAAGGCCGCACAGCCTGCCGTGAAAAAATAA
ATGAAGAAATTTTTATTTGGTGCGTTTGCCGCCGTTTGTGCGGCGTTCTCTTTGGCTGCCGTGAACATCAATACTGCGTC
TTCTGTCGAACTGGAGGCCTTGCCGGGTATCGGTCCGGCTAAGGCGAAATCGATTGTGGAATACCGTCAGAAGAACGGTG
CGTTCAAATCGGTGGAGGAGCTGAAAAACGTGAAGGGCATCGGTGATGCGGTGCTGAACAAGTTGAAGGCGGAGGCGACG
GTTTCTTCTGCTGCGCCTAAGGCCGCACAGCCTGCCGTGAAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE | Neisseria gonorrhoeae MS11 |
69.412 |
89.474 |
0.621 |
| comE | Neisseria gonorrhoeae MS11 |
69.412 |
89.474 |
0.621 |
| comE | Neisseria gonorrhoeae MS11 |
69.412 |
89.474 |
0.621 |
| comE | Neisseria gonorrhoeae MS11 |
69.412 |
89.474 |
0.621 |
| Cj0011c | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
53.659 |
86.316 |
0.463 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
44.186 |
90.526 |
0.4 |