Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   FAH67_RS00710 Genome accession   NZ_CP039886
Coordinates   129362..129775 (+) Length   137 a.a.
NCBI ID   WP_341869382.1    Uniprot ID   -
Organism   Neisseria flavescens strain ATCC 13120     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 116545..129775 129362..129775 within 0


Gene organization within MGE regions


Location: 116545..129775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAH67_RS00640 (FAH67_00640) - 116545..116844 (+) 300 WP_003680004.1 hypothetical protein -
  FAH67_RS11655 - 116963..117089 (+) 127 Protein_123 IS5/IS1182 family transposase -
  FAH67_RS00645 (FAH67_00645) - 117383..118573 (+) 1191 WP_003680002.1 efflux RND transporter periplasmic adaptor subunit -
  FAH67_RS00650 (FAH67_00650) - 118675..120201 (+) 1527 WP_003680001.1 DHA2 family efflux MFS transporter permease subunit -
  FAH67_RS11660 - 120346..120609 (+) 264 WP_208648187.1 transposase -
  FAH67_RS11665 - 120627..121109 (+) 483 WP_112890680.1 IS5 family transposase -
  FAH67_RS00660 (FAH67_00660) - 121229..121633 (+) 405 WP_003682599.1 hypothetical protein -
  FAH67_RS00670 (FAH67_00670) thrB 121815..122732 (-) 918 WP_003682602.1 homoserine kinase -
  FAH67_RS00705 (FAH67_00705) comE 128810..129097 (+) 288 WP_039863774.1 helix-hairpin-helix domain-containing protein Machinery gene
  FAH67_RS00710 (FAH67_00710) comP 129362..129775 (+) 414 WP_341869382.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 14949.36 Da        Isoelectric Point: 9.6318

>NTDB_id=360880 FAH67_RS00710 WP_341869382.1 129362..129775(+) (comP) [Neisseria flavescens strain ATCC 13120]
MLLVSILATAAFTAYRESVRSANLRAAHAALLENARFMEQFYTKKGSFKLTSTKWPELPVKEAGGFCIRMNGQAKGILEG
KFTLKAVALDREAEPRVLRLNESLTAVVCGKMKGKGSCTDGEEIFRGNDAECKPFGA

Nucleotide


Download         Length: 414 bp        

>NTDB_id=360880 FAH67_RS00710 WP_341869382.1 129362..129775(+) (comP) [Neisseria flavescens strain ATCC 13120]
ATGCTGTTGGTTTCGATATTGGCGACGGCGGCATTTACGGCCTATCGGGAATCGGTCCGCTCGGCCAACCTGCGTGCGGC
GCATGCCGCCCTGCTGGAAAATGCGCGCTTTATGGAGCAGTTCTATACGAAAAAGGGCAGCTTTAAGCTGACGTCGACGA
AGTGGCCGGAGCTGCCGGTGAAGGAGGCGGGTGGTTTCTGCATTCGGATGAACGGTCAGGCTAAGGGGATACTGGAAGGG
AAGTTTACCCTGAAGGCGGTGGCGTTGGACAGGGAGGCGGAGCCGAGGGTATTACGCTTGAACGAGTCGCTGACGGCGGT
GGTGTGCGGGAAGATGAAGGGGAAGGGAAGCTGTACGGACGGCGAGGAGATATTTAGGGGCAATGATGCGGAGTGTAAAC
CATTTGGCGCATAG

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(14-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria subflava NJ9703

97.037

98.54

0.956
  comP Neisseria meningitidis 8013

51.852

98.54

0.511
  comP Neisseria gonorrhoeae MS11

51.88

97.08

0.504

Multiple sequence alignment