NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	GSY65_RS01050	Genome accession	NZ_CP047318
Coordinates	270508..271164 (+)	Length	218 a.a.
NCBI ID	WP_159765390.1	Uniprot ID	-
Organism	Streptomyces sp. HM190
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 265508..276164

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GSY65_RS01025	-	266288..267094 (-)	807	WP_159765380.1	VOC family protein	-
GSY65_RS01030	-	267301..267732 (+)	432	WP_159765382.1	hypothetical protein	-
GSY65_RS01035	-	267816..268490 (+)	675	WP_159765384.1	DUF3105 domain-containing protein	-
GSY65_RS01040	-	268619..269623 (-)	1005	WP_159765386.1	TerC family protein	-
GSY65_RS01045	-	269784..270266 (-)	483	WP_159765388.1	VOC family protein	-
GSY65_RS01050	clpP	270508..271164 (+)	657	WP_159765390.1	ATP-dependent Clp protease proteolytic subunit	Regulator
GSY65_RS01055	clpP	271164..271760 (+)	597	WP_159765393.1	ATP-dependent Clp protease proteolytic subunit	Regulator
GSY65_RS01060	-	271839..272342 (-)	504	WP_159765395.1	helix-turn-helix transcriptional regulator	-
GSY65_RS34235	-	272761..272883 (+)	123	WP_268978178.1	hypothetical protein	-
GSY65_RS01065	-	272945..274297 (-)	1353	WP_201452425.1	DUF6777 domain-containing protein	-
GSY65_RS01070	-	274461..275747 (+)	1287	WP_159765397.1	streptophobe family protein	-

Sequence

Protein

Download Length: 218 a.a. Molecular weight: 23758.90 Da Isoelectric Point: 5.3494

                                >NTDB_id=359100 GSY65_RS01050 WP_159765390.1 270508..271164(+) (clpP) [Streptomyces sp. HM190]

MTPLITGRDRSLAPRAEEGDTPTSRFDDHLAAQLLGQRIVFLGTQVDEVSANRVCAQLLLLSAEDPRTDISLYINSPGGS

VTAGLAIYDTMRLIPNDVSTLVMGFAASMGQFLLTVGARGKRYALPNARIMMHQPSAGIGGTAADIAIQAENLEFTKRAV

ERITAEHTGQAPETIARDGDRDRWFTAEQAREYGMVDRVVESLDDVRPATSRRRMGLQ

Nucleotide

Download Length: 657 bp

                                >NTDB_id=359100 GSY65_RS01050 WP_159765390.1 270508..271164(+) (clpP) [Streptomyces sp. HM190]

ATGACTCCCCTGATCACCGGCCGGGACCGGTCGCTCGCCCCGCGCGCCGAGGAGGGCGACACTCCGACCTCCCGCTTCGA

CGACCATCTCGCCGCACAACTGCTCGGGCAGCGGATCGTGTTCCTCGGCACCCAGGTAGACGAGGTCTCCGCCAACCGGG

TCTGCGCGCAGTTGCTGCTGTTGTCGGCGGAGGACCCGCGCACCGACATCAGCCTGTACATCAACAGCCCCGGCGGTTCG

GTGACGGCGGGGCTCGCCATCTACGACACGATGCGGCTGATCCCGAACGACGTGTCGACCCTCGTCATGGGCTTCGCGGC

GAGCATGGGCCAGTTCCTGCTGACCGTGGGCGCGCGGGGCAAGCGGTACGCGCTGCCCAACGCGAGGATCATGATGCACC

AGCCGTCGGCGGGCATCGGCGGCACCGCCGCCGACATCGCGATCCAGGCGGAGAACCTGGAGTTCACCAAGCGGGCCGTC

GAGCGGATCACCGCCGAGCACACCGGCCAGGCCCCGGAGACGATCGCCAGGGACGGCGACCGGGACCGCTGGTTCACCGC

CGAGCAGGCCAGGGAGTACGGGATGGTCGACCGGGTCGTCGAGTCGCTCGACGACGTCCGCCCGGCCACGTCCCGCCGAC

GGATGGGACTGCAGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(30-201)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	50	81.651	0.408
clpP	Lactococcus lactis subsp. cremoris KW2	44.56	88.532	0.394
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	50	78.899	0.394
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	44.041	88.532	0.39
clpP	Streptococcus pneumoniae R6	48.555	79.358	0.385
clpP	Streptococcus pneumoniae TIGR4	48.555	79.358	0.385
clpP	Streptococcus pneumoniae Rx1	48.555	79.358	0.385
clpP	Streptococcus pneumoniae D39	48.555	79.358	0.385
clpP	Streptococcus pyogenes JRS4	46.857	80.275	0.376
clpP	Streptococcus pyogenes MGAS315	46.857	80.275	0.376
clpP	Streptococcus mutans UA159	46.286	80.275	0.372
clpP	Streptococcus thermophilus LMG 18311	46.243	79.358	0.367
clpP	Streptococcus thermophilus LMD-9	46.243	79.358	0.367

Detailed information NTG0359100