Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   GSY65_RS01055 Genome accession   NZ_CP047318
Coordinates   271164..271760 (+) Length   198 a.a.
NCBI ID   WP_159765393.1    Uniprot ID   -
Organism   Streptomyces sp. HM190     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 266164..276760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSY65_RS01025 - 266288..267094 (-) 807 WP_159765380.1 VOC family protein -
  GSY65_RS01030 - 267301..267732 (+) 432 WP_159765382.1 hypothetical protein -
  GSY65_RS01035 - 267816..268490 (+) 675 WP_159765384.1 DUF3105 domain-containing protein -
  GSY65_RS01040 - 268619..269623 (-) 1005 WP_159765386.1 TerC family protein -
  GSY65_RS01045 - 269784..270266 (-) 483 WP_159765388.1 VOC family protein -
  GSY65_RS01050 clpP 270508..271164 (+) 657 WP_159765390.1 ATP-dependent Clp protease proteolytic subunit Regulator
  GSY65_RS01055 clpP 271164..271760 (+) 597 WP_159765393.1 ATP-dependent Clp protease proteolytic subunit Regulator
  GSY65_RS01060 - 271839..272342 (-) 504 WP_159765395.1 helix-turn-helix transcriptional regulator -
  GSY65_RS34235 - 272761..272883 (+) 123 WP_268978178.1 hypothetical protein -
  GSY65_RS01065 - 272945..274297 (-) 1353 WP_201452425.1 DUF6777 domain-containing protein -
  GSY65_RS01070 - 274461..275747 (+) 1287 WP_159765397.1 streptophobe family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21342.20 Da        Isoelectric Point: 5.2781

>NTDB_id=359101 GSY65_RS01055 WP_159765393.1 271164..271760(+) (clpP) [Streptomyces sp. HM190]
MGTYTIPNVVERTPQGERSYDVYSRLLSERIIFLGTEIDDGVANVVIAQLLHLESSAPDSEIAIYINSPGGSFTSLMAIY
DTMSFVRAPISTVCVGQAASTAAVLLAGGDPGRRYVLEHARVLLGQPASGGSRGTVSDLALQAKEMARIRAQVEEVLGRH
THHDVAVLRADMDRDKVFTAAEAVAYGLADDVLRRREV

Nucleotide


Download         Length: 597 bp        

>NTDB_id=359101 GSY65_RS01055 WP_159765393.1 271164..271760(+) (clpP) [Streptomyces sp. HM190]
ATGGGAACGTACACGATTCCGAACGTGGTGGAGCGGACCCCGCAGGGCGAGCGGTCCTACGACGTGTACAGCCGACTGCT
GTCCGAGCGGATCATCTTCCTCGGCACGGAGATCGACGACGGGGTGGCGAACGTCGTCATCGCGCAGCTGCTGCACCTGG
AGTCGTCGGCGCCGGACAGCGAGATCGCGATCTACATCAACTCGCCGGGCGGATCGTTCACTTCGCTGATGGCGATCTAC
GACACGATGTCGTTCGTGCGGGCGCCGATCTCGACGGTCTGCGTGGGGCAGGCGGCGTCCACGGCGGCGGTGCTGCTCGC
GGGCGGGGACCCGGGGCGGCGGTACGTGCTGGAACACGCACGCGTGCTGCTGGGACAGCCGGCCAGCGGGGGCAGCCGCG
GGACGGTGTCGGACCTCGCCCTGCAGGCCAAGGAGATGGCGCGGATCCGGGCCCAGGTCGAGGAGGTGCTGGGCCGGCAC
ACCCACCACGACGTGGCGGTCCTGCGGGCCGACATGGACCGCGACAAGGTGTTCACCGCGGCGGAGGCGGTGGCGTACGG
GCTGGCCGACGACGTGCTGCGTCGACGGGAGGTGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

47.917

96.97

0.465
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

46.316

95.96

0.444
  clpP Streptococcus mutans UA159

38.144

97.98

0.374
  clpP Streptococcus pyogenes JRS4

38.144

97.98

0.374
  clpP Streptococcus pyogenes MGAS315

38.144

97.98

0.374
  clpP Streptococcus pneumoniae Rx1

38.624

95.455

0.369
  clpP Streptococcus pneumoniae D39

38.624

95.455

0.369
  clpP Streptococcus pneumoniae R6

38.624

95.455

0.369
  clpP Streptococcus pneumoniae TIGR4

38.624

95.455

0.369