Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   E7Z57_RS05365 Genome accession   NZ_CP039339
Coordinates   1084772..1086037 (-) Length   421 a.a.
NCBI ID   WP_064048492.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain UW386     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1079772..1091037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E7Z57_RS05335 (E7Z57_05335) - 1080843..1081727 (+) 885 WP_138928647.1 ATP-binding protein -
  E7Z57_RS05340 (E7Z57_05340) - 1081705..1082166 (+) 462 WP_064048488.1 NUDIX domain-containing protein -
  E7Z57_RS05345 (E7Z57_05345) yacG 1082159..1082374 (-) 216 WP_011002736.1 DNA gyrase inhibitor YacG -
  E7Z57_RS05350 (E7Z57_05350) zapD 1082385..1083143 (-) 759 WP_064048489.1 cell division protein ZapD -
  E7Z57_RS05355 (E7Z57_05355) coaE 1083261..1083875 (-) 615 WP_064048490.1 dephospho-CoA kinase -
  E7Z57_RS05360 (E7Z57_05360) - 1083888..1084769 (-) 882 WP_138928648.1 prepilin peptidase -
  E7Z57_RS05365 (E7Z57_05365) pilC 1084772..1086037 (-) 1266 WP_064048492.1 type II secretion system F family protein Machinery gene
  E7Z57_RS05370 (E7Z57_05370) pilF 1086082..1087809 (-) 1728 WP_064048493.1 type IV-A pilus assembly ATPase PilB Machinery gene
  E7Z57_RS05375 (E7Z57_05375) - 1088057..1089334 (-) 1278 WP_138928649.1 HlyC/CorC family transporter -
  E7Z57_RS05385 (E7Z57_05385) ispB 1089622..1090590 (-) 969 WP_011002729.1 octaprenyl diphosphate synthase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46568.83 Da        Isoelectric Point: 10.3648

>NTDB_id=358106 E7Z57_RS05365 WP_064048492.1 1084772..1086037(-) (pilC) [Ralstonia pseudosolanacearum strain UW386]
MATRAPTANRSAAASARKTAAKKAPTQYIFEWEGKDRKGKIFKGEMRAESITEVNAVLRKQGLSITQSKRRRAARGKKIV
PKDIAYFTRQLSTMLKAGVPLLQSVDIIARGHANPNFTQLLTEIRVDIESGSSMAQAFRRHPQHFDSLYCNLIDAGEQGG
ILDALLERLSMYMEKSIALKAQIKSAMIYPISVLTVAFLVTVVLMIFVVPAFKNVFASFGATLPAPTLVVMGISDFFVKW
WYIIIFTPVIGIFLYARAFKRSEKVQRNTHKAILKMPIFGSIIRKATIARWTRTLATMFSAGTPLVESMESVAGAAGNWV
YYDATMEIQQAVRIGTSLTNAMQATHVFDNMVLQMTQIGEESGALDNMLLKVAEFYEREVDDAVANISALIEPLIIVILG
VLIGGMVVAMYLPIFKLGQVV

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=358106 E7Z57_RS05365 WP_064048492.1 1084772..1086037(-) (pilC) [Ralstonia pseudosolanacearum strain UW386]
ATGGCCACACGAGCACCGACCGCGAACCGGTCCGCCGCTGCATCGGCACGCAAGACCGCCGCCAAGAAGGCGCCCACACA
GTACATCTTCGAGTGGGAAGGCAAGGACCGCAAAGGCAAGATCTTCAAGGGCGAGATGCGGGCGGAGAGCATCACCGAAG
TCAATGCGGTGCTGCGCAAACAAGGGCTGTCGATCACCCAGTCCAAGCGTCGGCGCGCGGCGCGCGGCAAGAAGATCGTA
CCCAAGGACATCGCCTACTTCACGCGCCAGCTGTCGACCATGCTGAAAGCGGGCGTGCCGCTGCTGCAATCGGTCGACAT
CATCGCGCGCGGGCACGCCAACCCGAACTTCACCCAGCTGCTGACGGAAATCCGTGTCGACATCGAGTCGGGCAGCAGCA
TGGCGCAGGCCTTCCGCCGCCATCCACAGCACTTCGATTCGCTGTACTGCAACCTGATCGACGCAGGTGAGCAGGGCGGT
ATTCTCGACGCGCTGCTCGAGCGGCTGTCGATGTACATGGAAAAGTCGATCGCGCTGAAGGCGCAGATCAAGTCGGCCAT
GATCTATCCGATCTCGGTGCTGACGGTGGCTTTCCTGGTCACGGTGGTGCTGATGATCTTCGTGGTGCCGGCGTTCAAGA
ACGTGTTCGCCAGCTTCGGCGCCACGCTACCGGCCCCGACGCTGGTGGTGATGGGCATCTCGGACTTCTTCGTGAAGTGG
TGGTACATCATCATCTTCACGCCCGTCATCGGCATCTTCCTGTATGCGCGCGCCTTCAAGCGCTCGGAGAAGGTGCAGCG
CAACACGCACAAGGCCATCCTGAAGATGCCGATCTTCGGCAGCATCATCCGCAAGGCCACCATCGCACGCTGGACGCGTA
CGCTGGCCACCATGTTCTCGGCCGGGACGCCGCTGGTGGAGTCGATGGAATCCGTGGCGGGCGCCGCCGGCAACTGGGTC
TACTATGACGCCACCATGGAGATCCAGCAGGCGGTGCGCATCGGTACCAGCCTCACCAACGCCATGCAGGCGACCCATGT
GTTCGACAACATGGTGCTGCAGATGACGCAGATCGGCGAGGAGTCCGGTGCGCTGGACAACATGCTGCTGAAGGTGGCCG
AATTCTACGAGCGCGAGGTCGATGACGCGGTGGCCAACATCTCCGCCCTGATCGAGCCGCTCATCATCGTGATCCTGGGC
GTGCTGATCGGGGGCATGGTGGTTGCCATGTACCTGCCGATCTTCAAACTGGGCCAAGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(87-210)

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

50.617

96.2

0.487
  pilG Neisseria gonorrhoeae MS11

50.376

94.774

0.477
  pilG Neisseria meningitidis 44/76-A

50.125

94.774

0.475
  pilC Acinetobacter baumannii D1279779

48.157

96.675

0.466
  pilC Acinetobacter baylyi ADP1

46.929

96.675

0.454
  pilC Legionella pneumophila strain ERS1305867

45.813

96.437

0.442
  pilC Vibrio campbellii strain DS40M4

38.971

96.912

0.378
  pilC Vibrio cholerae strain A1552

39.5

95.012

0.375

Multiple sequence alignment