Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   GR129_RS12180 Genome accession   NZ_CP047144
Coordinates   2784821..2785426 (-) Length   201 a.a.
NCBI ID   WP_085568519.1    Uniprot ID   -
Organism   Streptomyces sp. HF10     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 2779821..2790426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR129_RS12165 (GR129_12165) - 2781521..2782522 (+) 1002 WP_159701338.1 hypothetical protein -
  GR129_RS12170 (GR129_12170) clpX 2782631..2783917 (-) 1287 WP_145490443.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  GR129_RS12175 (GR129_12175) - 2784087..2784751 (-) 665 Protein_2432 ATP-dependent Clp protease proteolytic subunit -
  GR129_RS12180 (GR129_12180) clpP 2784821..2785426 (-) 606 WP_085568519.1 ATP-dependent Clp protease proteolytic subunit Regulator
  GR129_RS12185 (GR129_12185) tig 2785802..2787169 (-) 1368 WP_145490439.1 trigger factor -
  GR129_RS12200 (GR129_12200) - 2787839..2788225 (+) 387 WP_159701340.1 VOC family protein -
  GR129_RS12205 (GR129_12205) - 2788222..2788860 (+) 639 WP_159701343.1 TetR/AcrR family transcriptional regulator -
  GR129_RS12215 (GR129_12215) - 2789774..2789968 (-) 195 WP_145490431.1 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21248.08 Da        Isoelectric Point: 4.4655

>NTDB_id=357595 GR129_RS12180 WP_085568519.1 2784821..2785426(-) (clpP) [Streptomyces sp. HF10]
MPSAAGEPSIGGGLGDQVYNRLLGERIIFLGQQVDDDIANKITAQLLLLAADPDKDIYLYINSPGGSVTAGMAIYDTMQY
IPNDVVTIAMGMAASMGQFLLTGGAAGKRFALPHADIMMHQGSAGLGGSVTDIKIQAEYLLRTKHRMAELTALHSGQTFE
TITRDADRDRWFTPEEAKEYGLIDEIITNASGVPGGGGTGA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=357595 GR129_RS12180 WP_085568519.1 2784821..2785426(-) (clpP) [Streptomyces sp. HF10]
ATGCCCTCCGCCGCCGGCGAGCCCTCCATCGGTGGCGGCCTCGGCGACCAGGTCTACAACCGACTGCTCGGCGAGCGGAT
CATCTTCCTCGGCCAGCAGGTCGACGATGACATCGCCAACAAGATCACCGCTCAGCTGCTGCTCCTTGCCGCCGATCCGG
ACAAGGACATCTACCTCTACATCAACAGCCCCGGCGGCTCGGTGACGGCCGGCATGGCGATCTACGACACCATGCAGTAC
ATCCCGAACGACGTGGTCACCATCGCGATGGGCATGGCGGCCTCCATGGGCCAGTTCCTGCTCACCGGCGGCGCCGCGGG
CAAGCGCTTCGCCCTGCCGCACGCCGACATCATGATGCACCAGGGGTCCGCGGGCCTCGGCGGTTCGGTCACGGACATCA
AGATCCAGGCCGAGTACCTGCTGCGCACCAAGCACCGCATGGCGGAACTGACCGCGCTCCACTCCGGCCAGACCTTCGAG
ACGATCACCCGGGACGCGGACCGCGACCGCTGGTTCACCCCGGAAGAGGCCAAGGAGTACGGTCTCATTGACGAGATCAT
CACGAACGCCTCGGGTGTTCCGGGAGGCGGCGGCACCGGAGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Lactococcus lactis subsp. cremoris KW2

51.596

93.532

0.483
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.064

93.532

0.478
  clpP Bacillus subtilis subsp. subtilis str. 168

55.491

86.07

0.478
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.351

92.04

0.473
  clpP Streptococcus pneumoniae TIGR4

53.107

88.06

0.468
  clpP Streptococcus pneumoniae Rx1

53.107

88.06

0.468
  clpP Streptococcus pneumoniae D39

53.107

88.06

0.468
  clpP Streptococcus pneumoniae R6

53.107

88.06

0.468
  clpP Streptococcus pyogenes MGAS315

53.143

87.065

0.463
  clpP Streptococcus thermophilus LMG 18311

53.143

87.065

0.463
  clpP Streptococcus thermophilus LMD-9

53.143

87.065

0.463
  clpP Streptococcus pyogenes JRS4

53.143

87.065

0.463
  clpP Streptococcus mutans UA159

52

87.065

0.453