Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   E5093_RS13845 Genome accession   NZ_CP039031
Coordinates   2907209..2909347 (-) Length   712 a.a.
NCBI ID   WP_177156229.1    Uniprot ID   -
Organism   Acinetobacter indicus strain yy_1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2902209..2914347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5093_RS13830 (E5093_13945) - 2904676..2905512 (-) 837 WP_177156107.1 hypothetical protein -
  E5093_RS13835 (E5093_13950) aroB 2905525..2906607 (-) 1083 WP_168398886.1 3-dehydroquinate synthase -
  E5093_RS13840 (E5093_13955) aroK 2906630..2907172 (-) 543 WP_075167858.1 shikimate kinase AroK -
  E5093_RS13845 (E5093_13960) pilQ 2907209..2909347 (-) 2139 WP_177156229.1 type IV pilus secretin PilQ Machinery gene
  E5093_RS13850 (E5093_13965) pilP 2909408..2909935 (-) 528 WP_045795346.1 pilus assembly protein PilP Machinery gene
  E5093_RS13855 (E5093_13970) pilO 2909935..2910654 (-) 720 WP_005180513.1 type 4a pilus biogenesis protein PilO Machinery gene
  E5093_RS13860 (E5093_13975) pilN 2910651..2911286 (-) 636 WP_005180516.1 PilN domain-containing protein Machinery gene
  E5093_RS13865 (E5093_13980) pilM 2911286..2912344 (-) 1059 WP_005180518.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 712 a.a.        Molecular weight: 76799.95 Da        Isoelectric Point: 5.0523

>NTDB_id=356850 E5093_RS13845 WP_177156229.1 2907209..2909347(-) (pilQ) [Acinetobacter indicus strain yy_1]
MNNLFRQFSMGAVAMAVMQVANAQVSITNIVPMQIPGQGTEIRVMFNGLPPQPAAYQLEQPSRLVLDFDKAQQSLKQASI
PVATREASSVDVSSDAQRARLTVNLAEAGAFTTRVEGNTFILKINSTQAAATPVAVQQTAQGISNIGFQRGAEGEGQVVI
DLAGSNTPVDVQQQGSKIIVRTLGNKIPAHLARRLNVNDFATPVSTIDAQNDGGNGVITIQSAGSYEYMAYQAENKLTIS
LKRPVDKNPFKPRAAQSYTGKKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIILKTKNLD
KRRNGNVIWIAPVAELIKAEEEEAKAIAQSVKLAPLQTEYIQLNYAKAADIEKLITDGKNASNSRGGTNSGSGADPLGDS
VGSLLSPRGTVSVDPRTNTLIINDTAQKIDQIRGMIDLLDVSVKQVMIEARIVRATTDFTKEMGVKWGILSQGVMNNNHL
LVGGSDTTLWNLREPEFDDERGGYTYEIERPQNLNVDLGVTSPGASRIAFGLISLSDFMLDLELSALQADGYGEVISTPK
VLTADKQQAKVASGTQIPYQSAEGGGVNAVSTTEFIDATLSLDVTPSITPDGKVQMNLNITSDSPGAPTPTGQLTINKNS
INTNVLVDNGETVVLGGIFEQQTANQQTKVPFLGDIPYLGRLFRKDIKSDNKRELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2139 bp        

>NTDB_id=356850 E5093_RS13845 WP_177156229.1 2907209..2909347(-) (pilQ) [Acinetobacter indicus strain yy_1]
ATGAACAATTTGTTCCGTCAGTTTTCAATGGGCGCTGTTGCGATGGCCGTCATGCAAGTGGCCAATGCGCAGGTCAGCAT
TACCAATATTGTACCAATGCAAATTCCAGGACAAGGTACTGAAATTCGTGTCATGTTCAATGGCTTGCCACCTCAGCCTG
CAGCCTATCAGCTTGAGCAGCCATCACGTTTGGTGCTGGATTTTGATAAAGCCCAGCAGAGCTTAAAACAGGCCAGCATT
CCGGTTGCGACCCGGGAAGCCAGCTCGGTTGATGTCAGTTCCGATGCCCAGCGTGCACGTTTAACGGTTAATCTGGCTGA
AGCGGGTGCTTTTACTACCCGTGTCGAAGGTAATACTTTTATTCTTAAAATTAACAGCACTCAGGCAGCCGCAACACCAG
TAGCTGTACAGCAGACGGCTCAAGGCATATCGAATATCGGCTTTCAGCGCGGTGCAGAAGGGGAAGGTCAGGTAGTAATT
GACCTGGCAGGCAGCAACACCCCGGTCGATGTACAACAGCAAGGCAGTAAAATTATTGTCCGTACCTTGGGCAATAAAAT
TCCTGCACATCTGGCGCGCCGTTTAAACGTCAATGATTTTGCCACCCCGGTATCTACCATTGATGCGCAAAATGATGGTG
GCAATGGGGTAATTACTATTCAGTCTGCCGGAAGCTATGAATATATGGCGTATCAGGCAGAAAATAAACTGACCATCAGT
CTGAAACGTCCGGTAGATAAGAACCCGTTCAAACCGCGTGCAGCACAAAGCTATACCGGCAAAAAGATTTCTTTAGATTT
CCAGGATATTGAAGTGCGTCGTGTGCTGCAGTTACTGGCTGATTTTACCGGAATTAACATGGTTGCCGCCGATACGGTAC
AAGGCAATATCACCTTACGTCTCAAAGATGTGCCGTGGGATCAGGCACTAGATATTATTTTAAAAACCAAAAATCTGGAT
AAACGCCGTAATGGCAATGTGATCTGGATTGCACCCGTCGCAGAACTAATCAAGGCTGAAGAAGAAGAAGCCAAAGCGAT
TGCACAAAGCGTCAAGCTGGCGCCGCTGCAAACCGAATATATCCAGTTAAATTATGCCAAGGCTGCTGATATTGAGAAAC
TGATTACTGATGGTAAAAACGCATCCAATTCTCGAGGCGGCACAAATTCGGGTTCTGGGGCAGATCCACTTGGTGATAGC
GTCGGTAGTCTACTCAGCCCACGTGGTACGGTGTCGGTTGATCCACGAACCAACACCCTGATTATTAATGATACTGCACA
AAAAATTGACCAGATTCGCGGCATGATTGACTTGCTGGATGTATCGGTGAAACAGGTGATGATTGAAGCGCGTATTGTGC
GTGCCACCACTGACTTTACCAAAGAGATGGGGGTCAAGTGGGGCATCCTGTCACAAGGGGTCATGAATAATAACCATCTT
CTGGTCGGTGGTAGTGATACCACACTGTGGAATTTACGTGAGCCGGAATTTGACGATGAGCGTGGTGGTTATACCTATGA
AATTGAACGTCCACAAAACCTGAATGTCGATTTGGGGGTCACCAGCCCAGGTGCGAGCCGGATTGCTTTTGGTCTCATCA
GCCTGTCTGACTTTATGCTGGATTTAGAACTGTCTGCCCTACAAGCTGATGGTTATGGTGAAGTGATTTCGACACCGAAA
GTACTGACTGCTGATAAGCAACAGGCCAAAGTGGCTTCAGGTACGCAGATTCCATATCAGTCTGCTGAAGGTGGTGGTGT
CAATGCGGTGTCCACCACCGAGTTTATTGATGCTACGCTCAGTCTGGACGTAACGCCAAGCATTACCCCGGATGGTAAAG
TGCAGATGAACCTGAATATCACCAGTGATAGTCCGGGAGCACCAACGCCGACCGGTCAGCTGACGATTAACAAAAACTCG
ATCAATACCAATGTACTGGTCGATAATGGTGAAACTGTCGTGCTTGGCGGTATTTTTGAGCAGCAGACAGCCAATCAGCA
AACCAAAGTGCCATTCCTGGGGGATATTCCGTATTTAGGCCGTTTATTCCGTAAAGATATTAAATCGGACAATAAACGTG
AGTTGCTGATTTTTGTGACACCACGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(546-704)

AMIN domain (AMIN)

(40-121)

Bacterial type II/III secretion system short domain (Secretin_N)

(359-445)

Secretin and TonB N terminus short domain (STN)

(290-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

76.593

100

0.777
  pilQ Acinetobacter baumannii strain A118

76.454

100

0.775
  comQ Acinetobacter baylyi ADP1

74.51

100

0.747
  pilQ Pseudomonas aeruginosa PAK

40.514

98.455

0.399
  pilQ Legionella pneumophila strain ERS1305867

38.472

99.298

0.382
  pilQ Legionella pneumophila strain Lp02

38.472

99.298

0.382

Multiple sequence alignment