Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   E5093_RS13855 Genome accession   NZ_CP039031
Coordinates   2909935..2910654 (-) Length   239 a.a.
NCBI ID   WP_005180513.1    Uniprot ID   N9KYM2
Organism   Acinetobacter indicus strain yy_1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2904935..2915654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5093_RS13835 (E5093_13950) aroB 2905525..2906607 (-) 1083 WP_168398886.1 3-dehydroquinate synthase -
  E5093_RS13840 (E5093_13955) aroK 2906630..2907172 (-) 543 WP_075167858.1 shikimate kinase AroK -
  E5093_RS13845 (E5093_13960) pilQ 2907209..2909347 (-) 2139 WP_177156229.1 type IV pilus secretin PilQ Machinery gene
  E5093_RS13850 (E5093_13965) pilP 2909408..2909935 (-) 528 WP_045795346.1 pilus assembly protein PilP Machinery gene
  E5093_RS13855 (E5093_13970) pilO 2909935..2910654 (-) 720 WP_005180513.1 type 4a pilus biogenesis protein PilO Machinery gene
  E5093_RS13860 (E5093_13975) pilN 2910651..2911286 (-) 636 WP_005180516.1 PilN domain-containing protein Machinery gene
  E5093_RS13865 (E5093_13980) pilM 2911286..2912344 (-) 1059 WP_005180518.1 pilus assembly protein PilM Machinery gene
  E5093_RS13870 (E5093_13985) ponA 2912516..2915095 (+) 2580 WP_177156108.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 27087.71 Da        Isoelectric Point: 5.1311

>NTDB_id=356852 E5093_RS13855 WP_005180513.1 2909935..2910654(-) (pilO) [Acinetobacter indicus strain yy_1]
MSLDQYEEMNQDPVAAPKKKMTLDKFLQQWNTLDPNNYGSWPFSVKLTIWIFIIILIAFLGYFLAIKPKLDAISNARAQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNQQLQQLPKETEIPGLVEDVNVTGVNSGLRFKNIRLENEIKQEFFIEQP
ISIEATGDYHAFGSFVSGTAALPRIVTMHDFTITAGENKEKKTDIPQITYVAKAKTYRYVGNTDAQAGNSTTPATGAAQ

Nucleotide


Download         Length: 720 bp        

>NTDB_id=356852 E5093_RS13855 WP_005180513.1 2909935..2910654(-) (pilO) [Acinetobacter indicus strain yy_1]
ATGAGTCTCGATCAATATGAAGAAATGAATCAGGATCCTGTTGCTGCGCCAAAGAAAAAAATGACGCTGGATAAATTCCT
GCAGCAATGGAATACCTTAGATCCGAATAACTATGGCAGCTGGCCGTTTTCCGTCAAGCTGACCATCTGGATCTTTATCA
TTATTTTAATTGCCTTCCTGGGCTATTTCCTGGCCATCAAGCCGAAGCTGGATGCAATTTCCAATGCGCGTGCACAAGAG
CAGAACCTGCTGAATGAGTTTCGTGAAAAAGATTCCAAACTGCGTAACTTGCAGCAATATCAGGCGCAGTTACAGGAAAT
GGAAGCCAACTTTAACCAGCAGCTACAACAGTTGCCAAAAGAAACCGAAATTCCAGGTCTGGTTGAAGATGTCAACGTTA
CGGGTGTGAATTCAGGCTTAAGATTTAAAAATATCCGTCTGGAAAATGAAATCAAGCAAGAGTTCTTTATCGAGCAGCCA
ATTTCGATTGAAGCCACCGGTGATTATCATGCTTTTGGTTCTTTTGTGAGCGGTACAGCCGCTTTACCGCGAATTGTGAC
CATGCATGATTTCACTATTACTGCCGGTGAAAACAAGGAAAAGAAAACCGATATTCCACAAATTACCTATGTCGCGAAAG
CCAAGACCTATCGCTATGTCGGGAATACCGATGCACAGGCCGGTAATAGTACGACTCCAGCCACAGGAGCAGCACAATGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9KYM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

69.748

99.582

0.695
  comO Acinetobacter baylyi ADP1

67.213

100

0.686

Multiple sequence alignment