Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   EQK04_RS11080 Genome accession   NZ_CP038517
Coordinates   2183783..2184118 (+) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus altitudinis strain SCU11     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2178783..2189118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQK04_RS11060 (EQK04_11155) gcvT 2179259..2180356 (-) 1098 WP_017367586.1 glycine cleavage system aminomethyltransferase GcvT -
  EQK04_RS11065 (EQK04_11160) - 2180918..2182588 (+) 1671 WP_017367587.1 DEAD/DEAH box helicase -
  EQK04_RS11070 (EQK04_11165) - 2182603..2183400 (+) 798 WP_017367588.1 YqhG family protein -
  EQK04_RS11075 (EQK04_11170) - 2183585..2183749 (+) 165 WP_008342197.1 anti-repressor SinI family protein -
  EQK04_RS11080 (EQK04_11175) sinR 2183783..2184118 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  EQK04_RS11085 (EQK04_11180) tasA 2184186..2184986 (-) 801 WP_008342195.1 biofilm matrix protein TasA -
  EQK04_RS11090 (EQK04_11185) sipW 2185045..2185617 (-) 573 WP_017357979.1 signal peptidase I SipW -
  EQK04_RS11095 (EQK04_11190) tapA 2185668..2186195 (-) 528 WP_017367589.1 amyloid fiber anchoring/assembly protein TapA -
  EQK04_RS11100 (EQK04_11195) - 2186448..2186774 (+) 327 WP_017367590.1 DUF3889 domain-containing protein -
  EQK04_RS11105 (EQK04_11200) - 2186810..2186998 (-) 189 WP_017367591.1 YqzE family protein -
  EQK04_RS11110 (EQK04_11205) - 2187059..2187442 (-) 384 WP_017357982.1 competence type IV pilus minor pilin ComGG -
  EQK04_RS11115 (EQK04_11210) comGF 2187439..2187936 (-) 498 WP_017367592.1 competence type IV pilus minor pilin ComGF -
  EQK04_RS11120 (EQK04_11215) comGE 2187878..2188192 (-) 315 WP_017367593.1 competence type IV pilus minor pilin ComGE -
  EQK04_RS11125 (EQK04_11220) comGD 2188176..2188622 (-) 447 WP_017367594.1 competence type IV pilus minor pilin ComGD -
  EQK04_RS11130 (EQK04_11225) comGC 2188615..2188908 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=355003 EQK04_RS11080 WP_017357978.1 2183783..2184118(+) (sinR) [Bacillus altitudinis strain SCU11]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=355003 EQK04_RS11080 WP_017357978.1 2183783..2184118(+) (sinR) [Bacillus altitudinis strain SCU11]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928

Multiple sequence alignment