Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   EQK04_RS11130 Genome accession   NZ_CP038517
Coordinates   2188615..2188908 (-) Length   97 a.a.
NCBI ID   WP_008342186.1    Uniprot ID   A0A5K1NAM4
Organism   Bacillus altitudinis strain SCU11     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2183615..2193908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQK04_RS11080 (EQK04_11175) sinR 2183783..2184118 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  EQK04_RS11085 (EQK04_11180) tasA 2184186..2184986 (-) 801 WP_008342195.1 biofilm matrix protein TasA -
  EQK04_RS11090 (EQK04_11185) sipW 2185045..2185617 (-) 573 WP_017357979.1 signal peptidase I SipW -
  EQK04_RS11095 (EQK04_11190) tapA 2185668..2186195 (-) 528 WP_017367589.1 amyloid fiber anchoring/assembly protein TapA -
  EQK04_RS11100 (EQK04_11195) - 2186448..2186774 (+) 327 WP_017367590.1 DUF3889 domain-containing protein -
  EQK04_RS11105 (EQK04_11200) - 2186810..2186998 (-) 189 WP_017367591.1 YqzE family protein -
  EQK04_RS11110 (EQK04_11205) - 2187059..2187442 (-) 384 WP_017357982.1 competence type IV pilus minor pilin ComGG -
  EQK04_RS11115 (EQK04_11210) comGF 2187439..2187936 (-) 498 WP_017367592.1 competence type IV pilus minor pilin ComGF -
  EQK04_RS11120 (EQK04_11215) comGE 2187878..2188192 (-) 315 WP_017367593.1 competence type IV pilus minor pilin ComGE -
  EQK04_RS11125 (EQK04_11220) comGD 2188176..2188622 (-) 447 WP_017367594.1 competence type IV pilus minor pilin ComGD -
  EQK04_RS11130 (EQK04_11225) comGC 2188615..2188908 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  EQK04_RS11135 (EQK04_11230) comGB 2188925..2189965 (-) 1041 WP_017367595.1 competence type IV pilus assembly protein ComGB -
  EQK04_RS11140 (EQK04_11235) comGA 2189946..2191016 (-) 1071 WP_017357987.1 competence type IV pilus ATPase ComGA Machinery gene
  EQK04_RS11145 (EQK04_11240) - 2191474..2192343 (-) 870 WP_017367596.1 STAS domain-containing protein -
  EQK04_RS11155 (EQK04_11250) - 2192569..2192949 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  EQK04_RS11160 (EQK04_11255) - 2193162..2193404 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10728.62 Da        Isoelectric Point: 6.7081

>NTDB_id=355004 EQK04_RS11130 WP_008342186.1 2188615..2188908(-) (comGC) [Bacillus altitudinis strain SCU11]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQSIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIFIQNGDVKNE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=355004 EQK04_RS11130 WP_008342186.1 2188615..2188908(-) (comGC) [Bacillus altitudinis strain SCU11]
ATGAATGATAAAGGATTTACACTGTTAGAAATGTTAATTGTCATGCTTGTGATCTCCATTCTTTTATTGATCACCATTCC
AAATATCACTCGGCATCATCAAAGCATTCAAGCAAAGGGCTGTGAAGGGCTGAAATCAATGGTGAGTACACAGGTAATGG
CATATGAATTAGAGCATGACGGCAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAAGGATTAACT
TGTCCGAATGGAAAGGCAATTTTCATTCAAAACGGGGATGTGAAAAATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NAM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392

Multiple sequence alignment