Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   E4664_RS15125 Genome accession   NZ_CP038500
Coordinates   3081358..3082584 (+) Length   408 a.a.
NCBI ID   WP_135536561.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain CIAT758     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3076358..3087584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4664_RS15090 (E4664_15090) rimP 3077023..3077547 (-) 525 WP_000777730.1 ribosome maturation factor RimP -
  E4664_RS15110 (E4664_15110) secG 3078189..3078518 (-) 330 WP_000555570.1 preprotein translocase subunit SecG -
  E4664_RS15115 (E4664_15115) tpiA 3078531..3079325 (-) 795 WP_000016939.1 triose-phosphate isomerase -
  E4664_RS15120 (E4664_15120) pilB 3079616..3081328 (+) 1713 WP_001274989.1 type IV-A pilus assembly ATPase PilB Machinery gene
  E4664_RS15125 (E4664_15125) pilC 3081358..3082584 (+) 1227 WP_135536561.1 type II secretion system F family protein Machinery gene
  E4664_RS21365 (E4664_15130) pilD 3082584..3083444 (+) 861 WP_001152269.1 prepilin peptidase Machinery gene
  E4664_RS15135 (E4664_15135) coaE 3083446..3084042 (+) 597 WP_000874124.1 dephospho-CoA kinase -
  E4664_RS15140 (E4664_15140) - 3084039..3084953 (-) 915 WP_000075015.1 DMT family transporter -
  E4664_RS15145 (E4664_15145) rlmB 3084988..3085737 (-) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  E4664_RS15150 (E4664_15150) - 3085839..3086165 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  E4664_RS15155 (E4664_15155) - 3086242..3087552 (-) 1311 WP_000753286.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44964.48 Da        Isoelectric Point: 9.9566

>NTDB_id=354864 E4664_RS15125 WP_135536561.1 3081358..3082584(+) (pilC) [Acinetobacter baumannii strain CIAT758]
MAVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKIVPVFQDLFASFGADLPAFTQMVVNMSKWMQEYWFIMIIAIGAVIA
AFLEAKKRSKKFRDGLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEKAVMKIREDVA
TGQQLQFAMRISNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=354864 E4664_RS15125 WP_135536561.1 3081358..3082584(+) (pilC) [Acinetobacter baumannii strain CIAT758]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATCAAGGGAGA
ACTTCCGGCTAAAAACATGGCTTTAGCCAAAGTGACCTTACGCAAACAAGGGGTGACTGTTCGAAATATACGTGAAAAAC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAAAAAGTCACCACACTCGATATTACGATTTTTACTCGACAATTGGCGACC
ATGATGAAAGCTGGTGTACCACTCGTACAAGGCTTTGAAATTGTAGCTGAAGGTTTAGAAAACCCGGCCATGCGTGAGGT
TGTACTCGGTATTAAAGGTGAAGTCGAAGGTGGTAGTACTTTTGCCTCAGCTTTAAGAAAATATCCTCAACATTTTGATA
ACTTGTTTTGTTCACTTGTTGAGTCTGGTGAACAATCAGGCGCACTCGAAACGATGCTGGACCGCGTTGCAATTTACAAA
GAAAAAAGTGAATTGCTCAAGCAAAAAATCAAGAAAGCAATGAAATACCCGGCAACAGTTATTGTAGTAGCCATTGTGGT
GACCATTATTTTGATGGTTAAAATAGTTCCCGTTTTCCAAGATTTATTTGCGTCTTTTGGAGCAGATTTACCTGCATTTA
CGCAAATGGTTGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGCGATTGGCGCAGTCATTGCT
GCCTTTCTGGAAGCAAAAAAACGCAGTAAAAAGTTTCGTGACGGCTTAGATAAACTGGCGCTTAAGTTACCTATTTTTGG
GGACTTGGTTTATAAAGCAATTATTGCCCGCTATAGCCGCACGCTTGCTACAACATTTGCCGCAGGTGTTCCGCTTATTG
ATGCATTAGAATCGACTGCTGGCGCAACCAATAACGTGATTTATGAAAAAGCTGTGATGAAAATTCGTGAAGATGTAGCA
ACGGGTCAACAGCTTCAGTTTGCTATGCGGATCTCTAATCGTTTTCCATCTATGGCTATACAAATGGTTGCAATTGGTGA
AGAATCGGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTACTATGAAAATGAAGTGGATAATGCCGTTGATGGTT
TAACCTCTATGATGGAACCTTTAATTATGGCAATTTTAGGGGTGCTCGTAGGCGGTCTGGTAATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

99.755

100

0.998
  pilC Acinetobacter baylyi ADP1

85.539

100

0.855
  pilC Pseudomonas stutzeri DSM 10701

59.506

99.265

0.591
  pilC Legionella pneumophila strain ERS1305867

53.58

99.265

0.532
  pilG Neisseria meningitidis 44/76-A

46.985

97.549

0.458
  pilG Neisseria gonorrhoeae MS11

46.985

97.549

0.458
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.842

99.02

0.404
  pilC Thermus thermophilus HB27

36.908

98.284

0.363

Multiple sequence alignment