Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ADEG_RS03510 | Genome accession | NC_013385 |
| Coordinates | 711507..711929 (+) | Length | 140 a.a. |
| NCBI ID | WP_015738713.1 | Uniprot ID | C9RC58 |
| Organism | Ammonifex degensii KC4 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 706507..716929
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ADEG_RS03485 (Adeg_0683) | - | 707262..707867 (+) | 606 | WP_015738708.1 | hypothetical protein | - |
| ADEG_RS03490 (Adeg_0684) | - | 708080..708904 (+) | 825 | WP_015738709.1 | S1 RNA-binding domain-containing protein | - |
| ADEG_RS03495 (Adeg_0685) | - | 708920..709606 (+) | 687 | WP_015738710.1 | hypothetical protein | - |
| ADEG_RS03500 (Adeg_0686) | - | 709789..710838 (+) | 1050 | WP_015738711.1 | XRE family transcriptional regulator | - |
| ADEG_RS03505 (Adeg_0687) | - | 710823..711344 (+) | 522 | WP_015738712.1 | hypothetical protein | - |
| ADEG_RS03510 (Adeg_0688) | ssbA | 711507..711929 (+) | 423 | WP_015738713.1 | single-stranded DNA-binding protein | Machinery gene |
| ADEG_RS03515 (Adeg_0689) | dnaN | 712081..713241 (+) | 1161 | WP_015738714.1 | DNA polymerase III subunit beta | - |
| ADEG_RS03520 (Adeg_0690) | - | 713317..714183 (+) | 867 | WP_015738715.1 | hypothetical protein | - |
| ADEG_RS03525 (Adeg_0691) | - | 714408..714656 (+) | 249 | WP_015738716.1 | hypothetical protein | - |
| ADEG_RS03530 (Adeg_0692) | - | 714748..715440 (+) | 693 | WP_015738717.1 | hypothetical protein | - |
| ADEG_RS11185 (Adeg_0693) | - | 715508..716731 (+) | 1224 | WP_015738718.1 | CHC2 zinc finger domain-containing protein | - |
Sequence
Protein
Download Length: 140 a.a. Molecular weight: 15446.52 Da Isoelectric Point: 4.8741
>NTDB_id=35413 ADEG_RS03510 WP_015738713.1 711507..711929(+) (ssbA) [Ammonifex degensii KC4]
MLNRVILIGRLVRDPELRHTPQGTSVGGFTVAVDRPAAQEGERKADFIDVVVWSGLAEVCCRNLTKGRLVAVEGRLQTRS
YEDSRGIRRRVAEVVAENVRFLDRPKDAGAGKEEKPVSVNDEGVAMDEDVVMAVDDDIPF
MLNRVILIGRLVRDPELRHTPQGTSVGGFTVAVDRPAAQEGERKADFIDVVVWSGLAEVCCRNLTKGRLVAVEGRLQTRS
YEDSRGIRRRVAEVVAENVRFLDRPKDAGAGKEEKPVSVNDEGVAMDEDVVMAVDDDIPF
Nucleotide
Download Length: 423 bp
>NTDB_id=35413 ADEG_RS03510 WP_015738713.1 711507..711929(+) (ssbA) [Ammonifex degensii KC4]
ATGCTCAACAGGGTCATCTTGATCGGCCGGCTGGTGCGCGATCCCGAGCTGCGCCACACTCCTCAGGGGACGTCGGTGGG
CGGCTTCACGGTAGCGGTGGACCGGCCGGCTGCTCAGGAGGGAGAGCGCAAGGCCGACTTCATCGACGTGGTGGTGTGGT
CGGGGCTGGCGGAAGTGTGTTGCCGCAACCTGACCAAGGGGCGTCTGGTGGCGGTGGAGGGGCGGTTGCAAACCCGCTCC
TACGAGGACAGCCGGGGGATAAGGCGGCGTGTAGCGGAGGTGGTGGCGGAAAACGTGCGCTTCCTGGACCGGCCCAAGGA
CGCCGGGGCCGGGAAGGAAGAGAAACCCGTGAGCGTGAACGACGAGGGCGTCGCCATGGACGAAGACGTCGTCATGGCCG
TGGACGACGACATACCGTTTTAA
ATGCTCAACAGGGTCATCTTGATCGGCCGGCTGGTGCGCGATCCCGAGCTGCGCCACACTCCTCAGGGGACGTCGGTGGG
CGGCTTCACGGTAGCGGTGGACCGGCCGGCTGCTCAGGAGGGAGAGCGCAAGGCCGACTTCATCGACGTGGTGGTGTGGT
CGGGGCTGGCGGAAGTGTGTTGCCGCAACCTGACCAAGGGGCGTCTGGTGGCGGTGGAGGGGCGGTTGCAAACCCGCTCC
TACGAGGACAGCCGGGGGATAAGGCGGCGTGTAGCGGAGGTGGTGGCGGAAAACGTGCGCTTCCTGGACCGGCCCAAGGA
CGCCGGGGCCGGGAAGGAAGAGAAACCCGTGAGCGTGAACGACGAGGGCGTCGCCATGGACGAAGACGTCGTCATGGCCG
TGGACGACGACATACCGTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
40.698 |
100 |
0.5 |
| ssb | Neisseria gonorrhoeae MS11 |
32.558 |
100 |
0.4 |
| ssbB/cilA | Streptococcus mitis SK321 |
37.589 |
100 |
0.379 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
36.879 |
100 |
0.371 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
36.17 |
100 |
0.364 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
36.17 |
100 |
0.364 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
36.17 |
100 |
0.364 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
36.17 |
100 |
0.364 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
49.038 |
74.286 |
0.364 |